| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is malE [C]
Identifier: 119718849
GI number: 119718849
Start: 4912744
End: 4914003
Strand: Reverse
Name: malE [C]
Synonym: Noca_4632
Alternate gene names: 119718849
Gene position: 4914003-4912744 (Counterclockwise)
Preceding gene: 119718850
Following gene: 119718848
Centisome position: 98.56
GC content: 68.81
Gene sequence:
>1260_bases ATGAAGAACAACCGCAGGCGTCTGACGGCGATCGCCGTCGCCGGCGTCGCCTCCCTGGCCCTGGGCGCCTGCTCCCAGGG CTCGGCGACTTCGAAGGACGACGGGGCCGACGGCCAGACCACGATCACCTACATGGAGTTCTCCTCCAACGGGGGGCACG AGAAGGACCTGGCCGCGATCGTGGACGCGTTCGAGGCCGACCACCCCGACATCAAGGTCGAGGTGGAGACCACGCCGTAC GACGCGTACTTCACCAAGCTCCAGACAGCACTCGCCGGCGGCACCGCCGGGGACGCCTTCGAGCTCAACTACGAGAACTT CGTGACGTACGCCGAGAACGGCTCGCTCGCCCAGCTCGGGTCCTTCGACGAGGCGGCCTACAAGCCGTCGCTGCTCGACG CGTTCGCGCAGGACGGCGCCCAGTACGCGTTGCCCGAGTCCTTCTCCGACGTGGTGCTCTTCTACAACAAGGAGCTCTTC GACAAGGCCGGCCTGGAGACGCCCACCTCGGACTGGACCTGGGCGGACGAGCGCGCCGCCGCCGAGAAGCTGACCGACAA GGACGCCGGGATCTGGGGCGACTACCAGCCGGTGCAGTTCTTCGAGTTCTACAAGGCGCTCGCCCAGTCCGGTGGGTCGT TCTTCAGCGAGGACGGCTCGGAGGCGACGTTCGACTCCCCCGAGGGCATCGAGGCGGCCGAGTGGCTGGTGAGCAAGCCG GGCAGGACCATGCCGACCGAGGCCGAGGGCGCCGGCACACCGGACTTCGACACGAACCTGTTCAAGGACGGCAAGCTCGC GATGTGGCACAGCGGCATCTGGATGTTCGCCGGCCTGGCCGACGTGCCGTTCGAGTGGGACATCGCCGTCGAGCCGGGCA ACACCCAGCAGGCGTCGGCCATGTTCGCCAACGGGGTCGCCGTCAACGCGGCGAGCGAGAACAAGGCGGCTGCCGAGGAA TGGCTGTCCTACCTGACCTCGTCCGAGGTCACGGCGGACACCCGCCTGAGCACCTCGTGGGAGCTGCCGCCGGTGGCGGA CGAGTCCCTGCTGGCGCCGTACCTCGACCAGGACAAGCCCGCCAACCGGGCCGCTGTGATGGAGTCCCTGGAGTCCGTGG CGCTGCCGCCGGTCATCGCTCGGCAGGCCGAGATGCAGGACGCGATCACCCAGGAGCTCGGCGAGGCGGCCGCAGGCCGC AAGAGCGTGAAGGACGCGCTTGCGGACGCCAAGAAGGCCGTGGACGCCCTGCTCGGCTGA
Upstream 100 bases:
>100_bases GTCGTGGCCGGCATCGCGCACACCGGCATCAAGTGATCGCCGACTGCTCACCCCTGACTTCCCCGGTCGCCGACGACCGC GGACGACGAAAGGAACACCG
Downstream 100 bases:
>100_bases GCGCCGATCCCCGTGACGGGTGGGCCGCCCCGCGGCCCACCCGCCGCCCCCGACGACGACCCGACGAAGAGAGCCTCGCT CGCATGTCCTCCCTGCACCC
Product: extracellular solute-binding protein
Products: ADP; phosphate; maltose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MKNNRRRLTAIAVAGVASLALGACSQGSATSKDDGADGQTTITYMEFSSNGGHEKDLAAIVDAFEADHPDIKVEVETTPY DAYFTKLQTALAGGTAGDAFELNYENFVTYAENGSLAQLGSFDEAAYKPSLLDAFAQDGAQYALPESFSDVVLFYNKELF DKAGLETPTSDWTWADERAAAEKLTDKDAGIWGDYQPVQFFEFYKALAQSGGSFFSEDGSEATFDSPEGIEAAEWLVSKP GRTMPTEAEGAGTPDFDTNLFKDGKLAMWHSGIWMFAGLADVPFEWDIAVEPGNTQQASAMFANGVAVNAASENKAAAEE WLSYLTSSEVTADTRLSTSWELPPVADESLLAPYLDQDKPANRAAVMESLESVALPPVIARQAEMQDAITQELGEAAAGR KSVKDALADAKKAVDALLG
Sequences:
>Translated_419_residues MKNNRRRLTAIAVAGVASLALGACSQGSATSKDDGADGQTTITYMEFSSNGGHEKDLAAIVDAFEADHPDIKVEVETTPY DAYFTKLQTALAGGTAGDAFELNYENFVTYAENGSLAQLGSFDEAAYKPSLLDAFAQDGAQYALPESFSDVVLFYNKELF DKAGLETPTSDWTWADERAAAEKLTDKDAGIWGDYQPVQFFEFYKALAQSGGSFFSEDGSEATFDSPEGIEAAEWLVSKP GRTMPTEAEGAGTPDFDTNLFKDGKLAMWHSGIWMFAGLADVPFEWDIAVEPGNTQQASAMFANGVAVNAASENKAAAEE WLSYLTSSEVTADTRLSTSWELPPVADESLLAPYLDQDKPANRAAVMESLESVALPPVIARQAEMQDAITQELGEAAAGR KSVKDALADAKKAVDALLG >Mature_419_residues MKNNRRRLTAIAVAGVASLALGACSQGSATSKDDGADGQTTITYMEFSSNGGHEKDLAAIVDAFEADHPDIKVEVETTPY DAYFTKLQTALAGGTAGDAFELNYENFVTYAENGSLAQLGSFDEAAYKPSLLDAFAQDGAQYALPESFSDVVLFYNKELF DKAGLETPTSDWTWADERAAAEKLTDKDAGIWGDYQPVQFFEFYKALAQSGGSFFSEDGSEATFDSPEGIEAAEWLVSKP GRTMPTEAEGAGTPDFDTNLFKDGKLAMWHSGIWMFAGLADVPFEWDIAVEPGNTQQASAMFANGVAVNAASENKAAAEE WLSYLTSSEVTADTRLSTSWELPPVADESLLAPYLDQDKPANRAAVMESLESVALPPVIARQAEMQDAITQELGEAAAGR KSVKDALADAKKAVDALLG
Specific function: Probably part of an ABC transporter complex [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790466, Length=372, Percent_Identity=26.6129032258064, Blast_Score=63, Evalue=4e-11,
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 720 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 - InterPro: IPR006061 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 44836; Mature: 44836
Theoretical pI: Translated: 3.95; Mature: 3.95
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNNRRRLTAIAVAGVASLALGACSQGSATSKDDGADGQTTITYMEFSSNGGHEKDLAAI CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH VDAFEADHPDIKVEVETTPYDAYFTKLQTALAGGTAGDAFELNYENFVTYAENGSLAQLG HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEECHHHEEEECCCCCCHHCC SFDEAAYKPSLLDAFAQDGAQYALPESFSDVVLFYNKELFDKAGLETPTSDWTWADERAA CCHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCHHHHH AEKLTDKDAGIWGDYQPVQFFEFYKALAQSGGSFFSEDGSEATFDSPEGIEAAEWLVSKP HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC GRTMPTEAEGAGTPDFDTNLFKDGKLAMWHSGIWMFAGLADVPFEWDIAVEPGNTQQASA CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHECCCCCCCCEEEEEECCCCCHHHHH MFANGVAVNAASENKAAAEEWLSYLTSSEVTADTRLSTSWELPPVADESLLAPYLDQDKP HHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC ANRAAVMESLESVALPPVIARQAEMQDAITQELGEAAAGRKSVKDALADAKKAVDALLG CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKNNRRRLTAIAVAGVASLALGACSQGSATSKDDGADGQTTITYMEFSSNGGHEKDLAAI CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHH VDAFEADHPDIKVEVETTPYDAYFTKLQTALAGGTAGDAFELNYENFVTYAENGSLAQLG HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEECHHHEEEECCCCCCHHCC SFDEAAYKPSLLDAFAQDGAQYALPESFSDVVLFYNKELFDKAGLETPTSDWTWADERAA CCHHHHCCHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCHHHHH AEKLTDKDAGIWGDYQPVQFFEFYKALAQSGGSFFSEDGSEATFDSPEGIEAAEWLVSKP HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC GRTMPTEAEGAGTPDFDTNLFKDGKLAMWHSGIWMFAGLADVPFEWDIAVEPGNTQQASA CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHECCCCCCCCEEEEEECCCCCHHHHH MFANGVAVNAASENKAAAEEWLSYLTSSEVTADTRLSTSWELPPVADESLLAPYLDQDKP HHHCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC ANRAAVMESLESVALPPVIARQAEMQDAITQELGEAAAGRKSVKDALADAKKAVDALLG CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; maltose [Periplasm]; H2O [C]
Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA