| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718840
Identifier: 119718840
GI number: 119718840
Start: 4900595
End: 4901878
Strand: Reverse
Name: 119718840
Synonym: Noca_4623
Alternate gene names: NA
Gene position: 4901878-4900595 (Counterclockwise)
Preceding gene: 119718842
Following gene: 119718839
Centisome position: 98.32
GC content: 71.96
Gene sequence:
>1284_bases ATGGCGGCTGGGCATGCGCATCGCGCCCACCGCGGGCACCGGCACAGCCAGGCTCCCGGACCGGTACCCGGTCACGGTCC TGGCCACGGTCATGGCGGCGCGGGCGCGGAGGTCGAGATCTCCCGCGGCCCGCGCACGGTCCTGCTCTCGGCGCTCGTGC TGGCGGCCGCCGTGGCGATCGCCGGGCTGGTGCTGCTCTGGCCGAACGGGTCCGAGGTCGACAAGATCACCGAGAGCGTG CCGTTCGCCGCTCCCGGCGTCACCTTCCCGAACGCCGAGGTCGATCGGGTGCACCCGCCCTGCGCCGGCCCCGGAGACCG GTCGGAGGACTGCGGCCTGCTGGACGTCACCGTGGTGGAAGGCCCCGGGAAGGGCGACCACGCGTCGGTCCGGGTCGCCC CGCACGTGGCGGACTCCGGCCTGCAGCGCGGTGACGAGGTGAAGCTGCAGCGCACGCCCGGGCAGGACGGCGGGGACACG GCGTACGCCTACTTCGGCACCGACCGGAGCACCCCGCTCTTCGTGCTGCTGCTGGTGTTCGTCGGCCTGGTGCTGGTGGT CGCGCGGTGGCGCGGGCTCTTCGCGCTCGTGGGCCTGGCGTTCAGCGGGCTCGTGCTGTGGGAGTTCGTGCTCCCGGCGC TGCTCACCGGCGAGTCCGGACTGCTGGTCGGCCTGACCGCGGCCGCCGCGATCATGTTCGTGGTCCTCTACACGACCCAC GGGTTCTCGCTGCGCACCAGTACGGCGTTGGCCGGCACGCTGGTCGGGGTCGGGGTGACCGCGGGCCTGGGGGTCTTCGC GACCCGCGCGACCCGCCTCACCGGCATGACCGACGAGACCGCCGGGATCCTCTCGAGCCTGGTCGGCGGGCTGGACTTCC ACGGGCTGTTCGCCTGCGCGACCGTGATCGCCGGGCTGGGCGTCCTCAACGACGTCACGATCGCGCAGTCCTCCTCGGTG TGGGAGATCCGCGCCGCGGCACCGACGATGAGCCGGGCCGGGGTGTTCGCGAGCGGGATGCGGATCGGGCGCGACCACAT CGCCTCGACGATCTACACGATCGTGTTCGCCTACGCCGGCACGGCGCTGGCCGTGCTGCTCATCCTCCAGCTCTACGGCC TGCCGTTCGAGGACCTGCTGACCACAGAGGACATCACCGAGGAGATCGTGCGCACCCTGGCCAGCAGCATCGGGCTGGTG CTCGCCGTACCCCTCACCACCGGGATCGCGGCGCTCGTCATCCCCGGGCCTCTTGCTTATTCGGATAAGGATGCTTTAGA GTAG
Upstream 100 bases:
>100_bases GTCGGCACCGGGCCATTCTGCTGCCTCCACGGGCGTGCGTGCAGACTGTTCGCGGGCGAGCGAGGTCGGCGGCGCCCTCG GACGAGGAAGGACGGCGGTC
Downstream 100 bases:
>100_bases TAAGCATGAACCTCACCGAGCGCGAGCAGGAGATCGTGACCCTGCTGCGGCGCGATCCGCTCGTCAGCTCGGCGGCGATC GCCGAAGCGCTCGGGACCAC
Product: YibE/F family protein
Products: NA
Alternate protein names: YibE/F-Like Protein; Multitransmembrane Protein; Integral Membrane Protein; Yibe/F Family Protein; Multitransmembrane Protein-Like Protein; YibE/F-Like Family Protein; Multitransmembrane Protein-Like
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MAAGHAHRAHRGHRHSQAPGPVPGHGPGHGHGGAGAEVEISRGPRTVLLSALVLAAAVAIAGLVLLWPNGSEVDKITESV PFAAPGVTFPNAEVDRVHPPCAGPGDRSEDCGLLDVTVVEGPGKGDHASVRVAPHVADSGLQRGDEVKLQRTPGQDGGDT AYAYFGTDRSTPLFVLLLVFVGLVLVVARWRGLFALVGLAFSGLVLWEFVLPALLTGESGLLVGLTAAAAIMFVVLYTTH GFSLRTSTALAGTLVGVGVTAGLGVFATRATRLTGMTDETAGILSSLVGGLDFHGLFACATVIAGLGVLNDVTIAQSSSV WEIRAAAPTMSRAGVFASGMRIGRDHIASTIYTIVFAYAGTALAVLLILQLYGLPFEDLLTTEDITEEIVRTLASSIGLV LAVPLTTGIAALVIPGPLAYSDKDALE
Sequences:
>Translated_427_residues MAAGHAHRAHRGHRHSQAPGPVPGHGPGHGHGGAGAEVEISRGPRTVLLSALVLAAAVAIAGLVLLWPNGSEVDKITESV PFAAPGVTFPNAEVDRVHPPCAGPGDRSEDCGLLDVTVVEGPGKGDHASVRVAPHVADSGLQRGDEVKLQRTPGQDGGDT AYAYFGTDRSTPLFVLLLVFVGLVLVVARWRGLFALVGLAFSGLVLWEFVLPALLTGESGLLVGLTAAAAIMFVVLYTTH GFSLRTSTALAGTLVGVGVTAGLGVFATRATRLTGMTDETAGILSSLVGGLDFHGLFACATVIAGLGVLNDVTIAQSSSV WEIRAAAPTMSRAGVFASGMRIGRDHIASTIYTIVFAYAGTALAVLLILQLYGLPFEDLLTTEDITEEIVRTLASSIGLV LAVPLTTGIAALVIPGPLAYSDKDALE >Mature_426_residues AAGHAHRAHRGHRHSQAPGPVPGHGPGHGHGGAGAEVEISRGPRTVLLSALVLAAAVAIAGLVLLWPNGSEVDKITESVP FAAPGVTFPNAEVDRVHPPCAGPGDRSEDCGLLDVTVVEGPGKGDHASVRVAPHVADSGLQRGDEVKLQRTPGQDGGDTA YAYFGTDRSTPLFVLLLVFVGLVLVVARWRGLFALVGLAFSGLVLWEFVLPALLTGESGLLVGLTAAAAIMFVVLYTTHG FSLRTSTALAGTLVGVGVTAGLGVFATRATRLTGMTDETAGILSSLVGGLDFHGLFACATVIAGLGVLNDVTIAQSSSVW EIRAAAPTMSRAGVFASGMRIGRDHIASTIYTIVFAYAGTALAVLLILQLYGLPFEDLLTTEDITEEIVRTLASSIGLVL AVPLTTGIAALVIPGPLAYSDKDALE
Specific function: Unknown
COG id: COG5438
COG function: function code S; Predicted multitransmembrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43876; Mature: 43745
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: PS00974 MANNITOL_DHGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGHAHRAHRGHRHSQAPGPVPGHGPGHGHGGAGAEVEISRGPRTVLLSALVLAAAVAI CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH AGLVLLWPNGSEVDKITESVPFAAPGVTFPNAEVDRVHPPCAGPGDRSEDCGLLDVTVVE HCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE GPGKGDHASVRVAPHVADSGLQRGDEVKLQRTPGQDGGDTAYAYFGTDRSTPLFVLLLVF CCCCCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHH VGLVLVVARWRGLFALVGLAFSGLVLWEFVLPALLTGESGLLVGLTAAAAIMFVVLYTTH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCC GFSLRTSTALAGTLVGVGVTAGLGVFATRATRLTGMTDETAGILSSLVGGLDFHGLFACA CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH TVIAGLGVLNDVTIAQSSSVWEIRAAAPTMSRAGVFASGMRIGRDHIASTIYTIVFAYAG HHHHHHHHHCCEEEECCCCCEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH TALAVLLILQLYGLPFEDLLTTEDITEEIVRTLASSIGLVLAVPLTTGIAALVIPGPLAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCEEEEECCCCCC SDKDALE CCHHCCC >Mature Secondary Structure AAGHAHRAHRGHRHSQAPGPVPGHGPGHGHGGAGAEVEISRGPRTVLLSALVLAAAVAI CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHH AGLVLLWPNGSEVDKITESVPFAAPGVTFPNAEVDRVHPPCAGPGDRSEDCGLLDVTVVE HCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE GPGKGDHASVRVAPHVADSGLQRGDEVKLQRTPGQDGGDTAYAYFGTDRSTPLFVLLLVF CCCCCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHH VGLVLVVARWRGLFALVGLAFSGLVLWEFVLPALLTGESGLLVGLTAAAAIMFVVLYTTH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHCC GFSLRTSTALAGTLVGVGVTAGLGVFATRATRLTGMTDETAGILSSLVGGLDFHGLFACA CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH TVIAGLGVLNDVTIAQSSSVWEIRAAAPTMSRAGVFASGMRIGRDHIASTIYTIVFAYAG HHHHHHHHHCCEEEECCCCCEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH TALAVLLILQLYGLPFEDLLTTEDITEEIVRTLASSIGLVLAVPLTTGIAALVIPGPLAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHCCEEEEECCCCCC SDKDALE CCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA