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The map label for this gene is 119718831

Identifier: 119718831

GI number: 119718831

Start: 4889383

End: 4890624

Strand: Reverse

Name: 119718831

Synonym: Noca_4614

Alternate gene names: NA

Gene position: 4890624-4889383 (Counterclockwise)

Preceding gene: 119718836

Following gene: 119718830

Centisome position: 98.09

GC content: 75.04

Gene sequence:

>1242_bases
GTGAGCGATGCGCACGCGGCGGTCGAGCGGATCTATCGCGAGGAGTACGGCCGGGTCGTCGCCTCCCTGGTCCGCCGCTT
CGGCGACATCGACGTCGCCGAGGAGGCCGCCGGCGAGGCGCTCCTGGTCGCCCTGGAACGGTGGCCACGAGACGGCGTAC
CGCCCAACCCCGGCGGGTGGCTGACCACGACGGCCGGCAACCGCGCCATCGACCGGATCCGCCGCGAGTCGCACCGCGAC
GCCAAGCACCAGGCGGCACTGATGATGCATGACGACACACCTCACGAGCCCACGGGACCGGTTGCCGACGACCGGCTGCG
GCTGATCTTCACCTGCTGCCACCCCGCGCTCGCGCCCGAGGCCCGGGTGGCCCTGACGCTACGGCTGCTCGGCGGACTGA
CGGTCCCCGAGATCGCGCGGGCCTTCCTCGTGCCCGAGACCACGATGGCGCAGCGGATCACCCGCGCGAAGCGGAAGATC
AAGGCCGCCCACATCCCCTTCCGCGTGCCCGCCGCCGAAGACCTGGCCGGCCGGCTCTCCGCGGTGCTCGCGGTGGTCTA
CCTGGTGTTCAACGAGGGCTATCTCGCGAGCTCGGGGGACGCGCCGATCCGCGAGGACCTGACCGCCGAGGCGATCCGGC
TGGGCCGGATCCTGCGCGGCCTGCTCCCGGACCAGCCCGAGGTCGCCGGGCTGCTCGCCCTCATGCTGCTCACCGACGCC
CGGCGCACCACGCGGGTGGCGGGCGGGGAGCTGGTGCCGCTGCACGAGCAGGACCGCGGCGGCTGGGACCGGGAGCTGAT
CGCGGAGGGACACGGGCTGGTCCGCGCGTGCCTCGCGCACGCCCGGGAGACCGGCAGGGCGCCGGGGCAGTACCAGCTGC
TCGCGGCGATCAACGCCGTGCACACCGACGCCCCGACCGCGGCCGACACCGACTGGTCGCAGATCGCCGCGCTCTACGAG
CAGCTCCACGCGCTCGTGCCGAGCCCCGTCGTCGCGCTCAACCGGGCGGTCGCCGTGGCCGAGCTCGACGGTCCCGAGGT
CGCGCTCGCCGAGGTGGACCGGCTGCCGCTGACGACGTACCACGCCTGGCACGCGACCCGCGCCGACCTGCTGCGCCGGC
TCGGGCGCAGCGCGGAGGCACGGGCGGCGTACGACGCCGCGATCGCGGCCACCGACAACCCGGCCGAGCGCGCGTACCTG
TCCCGTCGTCGCGGCAGCCTGGCCCCCGGCCCTCGTCCCTAG

Upstream 100 bases:

>100_bases
CCCGACCAGGAGGTTCCACCATGTCGCAGCACGTGCTCTCGATCGTCCCCGACGAGGCCGACCGGGTCCCGGCCCGCCCG
CTCCGGGAGGAGCGGGGCGC

Downstream 100 bases:

>100_bases
CCCGCGTTCCTGGTCGGCGTCCCTGGTCTGCGTCCCTCCTCTGCATCCCTACTCTGGGCGACATGAGCCTCGCCCCTCTC
GCGCTCCCGTTGCCCGACGA

Product: sigma-70 region 2 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSDAHAAVERIYREEYGRVVASLVRRFGDIDVAEEAAGEALLVALERWPRDGVPPNPGGWLTTTAGNRAIDRIRRESHRD
AKHQAALMMHDDTPHEPTGPVADDRLRLIFTCCHPALAPEARVALTLRLLGGLTVPEIARAFLVPETTMAQRITRAKRKI
KAAHIPFRVPAAEDLAGRLSAVLAVVYLVFNEGYLASSGDAPIREDLTAEAIRLGRILRGLLPDQPEVAGLLALMLLTDA
RRTTRVAGGELVPLHEQDRGGWDRELIAEGHGLVRACLAHARETGRAPGQYQLLAAINAVHTDAPTAADTDWSQIAALYE
QLHALVPSPVVALNRAVAVAELDGPEVALAEVDRLPLTTYHAWHATRADLLRRLGRSAEARAAYDAAIAATDNPAERAYL
SRRRGSLAPGPRP

Sequences:

>Translated_413_residues
MSDAHAAVERIYREEYGRVVASLVRRFGDIDVAEEAAGEALLVALERWPRDGVPPNPGGWLTTTAGNRAIDRIRRESHRD
AKHQAALMMHDDTPHEPTGPVADDRLRLIFTCCHPALAPEARVALTLRLLGGLTVPEIARAFLVPETTMAQRITRAKRKI
KAAHIPFRVPAAEDLAGRLSAVLAVVYLVFNEGYLASSGDAPIREDLTAEAIRLGRILRGLLPDQPEVAGLLALMLLTDA
RRTTRVAGGELVPLHEQDRGGWDRELIAEGHGLVRACLAHARETGRAPGQYQLLAAINAVHTDAPTAADTDWSQIAALYE
QLHALVPSPVVALNRAVAVAELDGPEVALAEVDRLPLTTYHAWHATRADLLRRLGRSAEARAAYDAAIAATDNPAERAYL
SRRRGSLAPGPRP
>Mature_412_residues
SDAHAAVERIYREEYGRVVASLVRRFGDIDVAEEAAGEALLVALERWPRDGVPPNPGGWLTTTAGNRAIDRIRRESHRDA
KHQAALMMHDDTPHEPTGPVADDRLRLIFTCCHPALAPEARVALTLRLLGGLTVPEIARAFLVPETTMAQRITRAKRKIK
AAHIPFRVPAAEDLAGRLSAVLAVVYLVFNEGYLASSGDAPIREDLTAEAIRLGRILRGLLPDQPEVAGLLALMLLTDAR
RTTRVAGGELVPLHEQDRGGWDRELIAEGHGLVRACLAHARETGRAPGQYQLLAAINAVHTDAPTAADTDWSQIAALYEQ
LHALVPSPVVALNRAVAVAELDGPEVALAEVDRLPLTTYHAWHATRADLLRRLGRSAEARAAYDAAIAATDNPAERAYLS
RRRGSLAPGPRP

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 44804; Mature: 44672

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAHAAVERIYREEYGRVVASLVRRFGDIDVAEEAAGEALLVALERWPRDGVPPNPGGW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCE
LTTTAGNRAIDRIRRESHRDAKHQAALMMHDDTPHEPTGPVADDRLRLIFTCCHPALAPE
EEECCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
ARVALTLRLLGGLTVPEIARAFLVPETTMAQRITRAKRKIKAAHIPFRVPAAEDLAGRLS
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHH
AVLAVVYLVFNEGYLASSGDAPIREDLTAEAIRLGRILRGLLPDQPEVAGLLALMLLTDA
HHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RRTTRVAGGELVPLHEQDRGGWDRELIAEGHGLVRACLAHARETGRAPGQYQLLAAINAV
HHHHHCCCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HTDAPTAADTDWSQIAALYEQLHALVPSPVVALNRAVAVAELDGPEVALAEVDRLPLTTY
HCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCCCHHHHHCCCCCEEH
HAWHATRADLLRRLGRSAEARAAYDAAIAATDNPAERAYLSRRRGSLAPGPRP
HHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SDAHAAVERIYREEYGRVVASLVRRFGDIDVAEEAAGEALLVALERWPRDGVPPNPGGW
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCE
LTTTAGNRAIDRIRRESHRDAKHQAALMMHDDTPHEPTGPVADDRLRLIFTCCHPALAPE
EEECCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
ARVALTLRLLGGLTVPEIARAFLVPETTMAQRITRAKRKIKAAHIPFRVPAAEDLAGRLS
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHH
AVLAVVYLVFNEGYLASSGDAPIREDLTAEAIRLGRILRGLLPDQPEVAGLLALMLLTDA
HHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
RRTTRVAGGELVPLHEQDRGGWDRELIAEGHGLVRACLAHARETGRAPGQYQLLAAINAV
HHHHHCCCCCEEECCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HTDAPTAADTDWSQIAALYEQLHALVPSPVVALNRAVAVAELDGPEVALAEVDRLPLTTY
HCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECCCCCCHHHHHCCCCCEEH
HAWHATRADLLRRLGRSAEARAAYDAAIAATDNPAERAYLSRRRGSLAPGPRP
HHHHHHHHHHHHHHCCCCHHHHHHHHHEECCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]