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The map label for this gene is dcd

Identifier: 119718631

GI number: 119718631

Start: 4667163

End: 4667738

Strand: Reverse

Name: dcd

Synonym: Noca_4412

Alternate gene names: 119718631

Gene position: 4667738-4667163 (Counterclockwise)

Preceding gene: 119718636

Following gene: 119718630

Centisome position: 93.62

GC content: 69.27

Gene sequence:

>576_bases
GTGCTGCTGTCAGACCGCGACATCCTGGTCGAGATCGACGCCGGGCGGGTCGCCCTCGAGCCCTACGACCCGGGCATGCT
CCAGCCGTCGTCGATCGACGTCCGGCTGGACCGGTTCTTCCGGGTCTTCGAGAACCACAAGTACCCCCACATCGACCCGG
CCGCCGACCAGTCGGACCTGACCCGGATGGTCGAGCCCGAGGGCGACGAGCCGTTCATCCTGCACCCGGGCGAGTTCGTG
CTCGGCTCGACGTACGAGGTCGTGACGCTGCCCGACGACATCGCCGCGCGCGTGGAGGGCAAGTCCTCGCTCGGCCGTCT
CGGCCTGCTCACCCACGCCACCGCGGGCTTCGTGGACCCGGGGTTCTCCGGGCACGTGACGCTCGAGCTGGCGAATGTCG
CGACGCTGCCGATCAAGCTCTACCCGGGGATGAAGATCGGCCAGTTCTGCTTCTTCCGGCTCTCCTCGCCCTCCGAGCAC
CCCTACGGCTCGGCGAAGTACGGCTCGCGCTACCAGGGCCAGCGCGGCCCGACGCCCTCGCGGTCGTACCAGAACTTCCA
CCGCACCCCGATCTAG

Upstream 100 bases:

>100_bases
CGAGTCGCCCAGGGCGACGTACCGGTGCAGGCTCACCGGGCCATTCTCACCGTCCCCGCATCCCGTGCCCACGGCGGGTG
GCGGCCGGTAGGTTGAGCGC

Downstream 100 bases:

>100_bases
GGCATGAGGTTAGGCTAACCTAACTTCATGGCAGTGACCCAGGCCCGGATGCCGATGATCCTCGACCAGGTCCAGGCGGT
CCGCGTCGACCGGCTCTCCC

Product: deoxycytidine triphosphate deaminase

Products: NA

Alternate protein names: dCTP deaminase

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MLLSDRDILVEIDAGRVALEPYDPGMLQPSSIDVRLDRFFRVFENHKYPHIDPAADQSDLTRMVEPEGDEPFILHPGEFV
LGSTYEVVTLPDDIAARVEGKSSLGRLGLLTHATAGFVDPGFSGHVTLELANVATLPIKLYPGMKIGQFCFFRLSSPSEH
PYGSAKYGSRYQGQRGPTPSRSYQNFHRTPI

Sequences:

>Translated_191_residues
MLLSDRDILVEIDAGRVALEPYDPGMLQPSSIDVRLDRFFRVFENHKYPHIDPAADQSDLTRMVEPEGDEPFILHPGEFV
LGSTYEVVTLPDDIAARVEGKSSLGRLGLLTHATAGFVDPGFSGHVTLELANVATLPIKLYPGMKIGQFCFFRLSSPSEH
PYGSAKYGSRYQGQRGPTPSRSYQNFHRTPI
>Mature_191_residues
MLLSDRDILVEIDAGRVALEPYDPGMLQPSSIDVRLDRFFRVFENHKYPHIDPAADQSDLTRMVEPEGDEPFILHPGEFV
LGSTYEVVTLPDDIAARVEGKSSLGRLGLLTHATAGFVDPGFSGHVTLELANVATLPIKLYPGMKIGQFCFFRLSSPSEH
PYGSAKYGSRYQGQRGPTPSRSYQNFHRTPI

Specific function: De novo synthesis of thymidylate. [C]

COG id: COG0717

COG function: function code F; Deoxycytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dCTP deaminase family

Homologues:

Organism=Escherichia coli, GI1788379, Length=191, Percent_Identity=41.3612565445026, Blast_Score=133, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DCD_NOCSJ (A1SQ24)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_925596.1
- ProteinModelPortal:   A1SQ24
- SMR:   A1SQ24
- STRING:   A1SQ24
- GeneID:   4596930
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_4412
- eggNOG:   COG0717
- HOGENOM:   HBG553199
- OMA:   FSGHVTL
- PhylomeDB:   A1SQ24
- ProtClustDB:   PRK00416
- BioCyc:   NSP35761:NOCA_4412-MONOMER
- HAMAP:   MF_00146
- InterPro:   IPR011962
- InterPro:   IPR008180
- TIGRFAMs:   TIGR02274

Pfam domain/function: PF00692 dUTPase

EC number: =3.5.4.13

Molecular weight: Translated: 21206; Mature: 21206

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSDRDILVEIDAGRVALEPYDPGMLQPSSIDVRLDRFFRVFENHKYPHIDPAADQSDL
CCCCCCCEEEEECCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHH
TRMVEPEGDEPFILHPGEFVLGSTYEVVTLPDDIAARVEGKSSLGRLGLLTHATAGFVDP
HHHCCCCCCCCEEECCCCEEECCCEEEEECCHHHHEEECCCCCCCCEEHHHHCCCCCCCC
GFSGHVTLELANVATLPIKLYPGMKIGQFCFFRLSSPSEHPYGSAKYGSRYQGQRGPTPS
CCCCEEEEEEECEEEEEEEECCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
RSYQNFHRTPI
CCCCCCCCCCC
>Mature Secondary Structure
MLLSDRDILVEIDAGRVALEPYDPGMLQPSSIDVRLDRFFRVFENHKYPHIDPAADQSDL
CCCCCCCEEEEECCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCHHHH
TRMVEPEGDEPFILHPGEFVLGSTYEVVTLPDDIAARVEGKSSLGRLGLLTHATAGFVDP
HHHCCCCCCCCEEECCCCEEECCCEEEEECCHHHHEEECCCCCCCCEEHHHHCCCCCCCC
GFSGHVTLELANVATLPIKLYPGMKIGQFCFFRLSSPSEHPYGSAKYGSRYQGQRGPTPS
CCCCEEEEEEECEEEEEEEECCCCEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
RSYQNFHRTPI
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA