Click here to switch to the map view.

The map label for this gene is yobV [H]

Identifier: 119718542

GI number: 119718542

Start: 4572481

End: 4573464

Strand: Reverse

Name: yobV [H]

Synonym: Noca_4323

Alternate gene names: 119718542

Gene position: 4573464-4572481 (Counterclockwise)

Preceding gene: 119718544

Following gene: 119718540

Centisome position: 91.73

GC content: 76.22

Gene sequence:

>984_bases
TTGCGATCTAGTGTCGGCGTCGTGAACACCAGCGCCCGGATGCTGCGCCTGCTCTCGCTGCTCCAGACCCACCGCTACTG
GCCCGGCGCCGAGCTCGCCGGACGCCTGGAGGTGAGCCCGCGGACCCTGCGCCGCGACATCGACCGGCTGCGCGAGCTCG
GCTACGACGTCGACGCGGTGCGCGGCGTGGCGGGCGGCTACCAGCTGCGGGCCGGTGGGCAGCTGCCGCCGCTGCTGCTC
GAGGACGACGAGGCCGTGGCGATCGCGGTCGCGCTGCGCACCGCGGCGGCGGGCGCCGTGGCCGGGCTCGAGGAGACCGC
GATCCAGGCGCTGACCAAGGTGATCGGCCTGATGCCACCTCGGCTGCGCCGCCGGATGGACGCCGTCCACTCCCAGACCG
ACGGCGTGCCGTGGGGCGGCGGGCCCGCACTGGACGCCGGCGTGCTCACGACCCTCGCCCAGGCCTGCCGCGACGACGAG
CCGGTGTCGTTCTCCTACGTCTCCCGGGACTCCTCGCCGAGCGAGCGCCGCGTCGAGCCGCACCGGCTCGTGTCCTTGGG
CCGGCGGTGGTACCTGGTCGCCTACGACCGGGACCGCCAGGACTGGCGCTCCTTCCGGGTGGACCGGGTCACCGCCCCGC
GGGCCTCCGGCCAGCGGTTCCTGCCGCGCCCGCTGCCCGCCCCGGACGCGCCGTCGTTCGTGCGGGCCGGGATCCGCGCG
ATGCCGCAGCGCTACGAGGTGCGGGTCCGGTTCGCGGTCGACGCGGCGACGGTCGCGGCGTACGTCGACCGCTGGGCCAC
GGTCGAGCCCGACGGGCCCGGCGCCTGTCGGATGGTGCTGGCCACCGACACCCTGGACTGGCCGCTGATGGTGCTGGCCC
GCATCGACGCGCCCTTCACCGTCGAGGGTCCCGACGAGCTGCGCGCGCAGGTCGCCTCCGCCGCCGCCCGCTTCGCCCGC
GCCACCTCGCCCCGCCGCATGTAA

Upstream 100 bases:

>100_bases
AAGCGGAGCGAGATCCGGTCGCGGGTCGAGGGGAGGAGCCTCAGGGTGTGGGTCGCCATGTCCCGACGGTAGGGACGCCA
CAGGTCAGTTCCTGACCGCT

Downstream 100 bases:

>100_bases
CGCGGGGTTATCGGATCTAGGAACCCTGTTACAAGGGGGTGACCAGATCCCACAACCCCGCGTTACAGCTGACGGTCAGG
CGGCGGCGGAGGCCACGATG

Product: helix-turn-helix, type 11 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MRSSVGVVNTSARMLRLLSLLQTHRYWPGAELAGRLEVSPRTLRRDIDRLRELGYDVDAVRGVAGGYQLRAGGQLPPLLL
EDDEAVAIAVALRTAAAGAVAGLEETAIQALTKVIGLMPPRLRRRMDAVHSQTDGVPWGGGPALDAGVLTTLAQACRDDE
PVSFSYVSRDSSPSERRVEPHRLVSLGRRWYLVAYDRDRQDWRSFRVDRVTAPRASGQRFLPRPLPAPDAPSFVRAGIRA
MPQRYEVRVRFAVDAATVAAYVDRWATVEPDGPGACRMVLATDTLDWPLMVLARIDAPFTVEGPDELRAQVASAAARFAR
ATSPRRM

Sequences:

>Translated_327_residues
MRSSVGVVNTSARMLRLLSLLQTHRYWPGAELAGRLEVSPRTLRRDIDRLRELGYDVDAVRGVAGGYQLRAGGQLPPLLL
EDDEAVAIAVALRTAAAGAVAGLEETAIQALTKVIGLMPPRLRRRMDAVHSQTDGVPWGGGPALDAGVLTTLAQACRDDE
PVSFSYVSRDSSPSERRVEPHRLVSLGRRWYLVAYDRDRQDWRSFRVDRVTAPRASGQRFLPRPLPAPDAPSFVRAGIRA
MPQRYEVRVRFAVDAATVAAYVDRWATVEPDGPGACRMVLATDTLDWPLMVLARIDAPFTVEGPDELRAQVASAAARFAR
ATSPRRM
>Mature_327_residues
MRSSVGVVNTSARMLRLLSLLQTHRYWPGAELAGRLEVSPRTLRRDIDRLRELGYDVDAVRGVAGGYQLRAGGQLPPLLL
EDDEAVAIAVALRTAAAGAVAGLEETAIQALTKVIGLMPPRLRRRMDAVHSQTDGVPWGGGPALDAGVLTTLAQACRDDE
PVSFSYVSRDSSPSERRVEPHRLVSLGRRWYLVAYDRDRQDWRSFRVDRVTAPRASGQRFLPRPLPAPDAPSFVRAGIRA
MPQRYEVRVRFAVDAATVAAYVDRWATVEPDGPGACRMVLATDTLDWPLMVLARIDAPFTVEGPDELRAQVASAAARFAR
ATSPRRM

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 35944; Mature: 35944

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSVGVVNTSARMLRLLSLLQTHRYWPGAELAGRLEVSPRTLRRDIDRLRELGYDVDAV
CCCCCCEECHHHHHHHHHHHHHHHCCCCCHHHCCEEECCHHHHHHHHHHHHHCCCCHHHH
RGVAGGYQLRAGGQLPPLLLEDDEAVAIAVALRTAAAGAVAGLEETAIQALTKVIGLMPP
HHCCCCEEECCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RLRRRMDAVHSQTDGVPWGGGPALDAGVLTTLAQACRDDEPVSFSYVSRDSSPSERRVEP
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCCCH
HRLVSLGRRWYLVAYDRDRQDWRSFRVDRVTAPRASGQRFLPRPLPAPDAPSFVRAGIRA
HHHHHHCCEEEEEEECCCHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
MPQRYEVRVRFAVDAATVAAYVDRWATVEPDGPGACRMVLATDTLDWPLMVLARIDAPFT
CCCCEEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEE
VEGPDELRAQVASAAARFARATSPRRM
ECCHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSSVGVVNTSARMLRLLSLLQTHRYWPGAELAGRLEVSPRTLRRDIDRLRELGYDVDAV
CCCCCCEECHHHHHHHHHHHHHHHCCCCCHHHCCEEECCHHHHHHHHHHHHHCCCCHHHH
RGVAGGYQLRAGGQLPPLLLEDDEAVAIAVALRTAAAGAVAGLEETAIQALTKVIGLMPP
HHCCCCEEECCCCCCCCEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
RLRRRMDAVHSQTDGVPWGGGPALDAGVLTTLAQACRDDEPVSFSYVSRDSSPSERRVEP
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCCCH
HRLVSLGRRWYLVAYDRDRQDWRSFRVDRVTAPRASGQRFLPRPLPAPDAPSFVRAGIRA
HHHHHHCCEEEEEEECCCHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
MPQRYEVRVRFAVDAATVAAYVDRWATVEPDGPGACRMVLATDTLDWPLMVLARIDAPFT
CCCCEEEEEEEEEHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHHCCCCEE
VEGPDELRAQVASAAARFARATSPRRM
ECCHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]