| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is bar [H]
Identifier: 119718489
GI number: 119718489
Start: 4509471
End: 4510586
Strand: Reverse
Name: bar [H]
Synonym: Noca_4270
Alternate gene names: 119718489
Gene position: 4510586-4509471 (Counterclockwise)
Preceding gene: 119718490
Following gene: 119718488
Centisome position: 90.47
GC content: 70.61
Gene sequence:
>1116_bases ATGACCCGTCCGATCGAGGTACGCAAGGTCCCGATCGAGCACGTCAGCGACGCGGCCGGCCTGGCCGACCTGATCGACGC CGGCGTGTTCTCGGCCGACGACGTGATCGCCGTCGTCGGCAAGACCGAGGGCAACGGCGGGGTGAACGACTACACCCGGA TCATCTCGACCCACGCCTACCGGGCGGTGCTGGAGGAGAAGGGCACCCGCAGCAAGGAGGAGGTCGCCCAGGTCCCGCTC GTGTGGTCCGGCGGCACCGACGGCGTGATCAGCCCGCACGCGACGATCTTCGCCTACGCGCCGGAGGGCCGGTACCTGCC GACCGACGAGCCGCGGGTGACCGTCGGCTACGCGATGAGCGAGGTGCTGCTCCCGGAGGACATCGGCCGCCCGGCCATGG TCGAGAAGGTCGCGGCGGGCGTCCGGGTCGCGATGGAGCGCGCCGGGATCACCGACCCGGCCGACGTGCACTACGTCCAG ACCAAGACGCCGCTGCTGGTGCAGGACACGATCAACGACGCCGAACGGCGCGGCGAGACCGTCTACACCCACAACACGCT GGAGTCGATGGACGTCTCCAACGCGACCACGGCCCTGGGCATCGCGGTGGCGCTCGGCGAGATCGAGATGCCCACCGCGG AGCAGATCTTCCACGACCTCTCCCTCTACTCCTCGGTCGCCTCCTGCTCCTCGGGCGTCGAGCTCGACCAGGCGCAGATC GTCGTCGTCGGCAACGCCCGCGGCGTGGGCGGCCGGTTCCGCGTCGGCCACAGCATCATGAAGGACGCCCTGGACATGGA CGGGGTCTGGGCGGCGATCCGGGACGCGGGCCTGGACGACATGCCCGTGGACTGCATCCACCCGCGGCACATCAAGGGCC GGCTGGTGAACCTGTTCCTCAAGTGCGAGGCCGATCCGACCGGGCGGGTCCGCGGCCGGCGTAACATCATGCTCGACGAC TCCGACGTCGCCTGGCACCGGCAGATCAAGGCCTGCGTGGGCGGCGTGGTCGCCGCGGTCTCCGGGGACCCGATGAACTT CGTGTCGGTCGCCGCGGTGCACCAGGGGCCGTCCGGGGGTGGGCCGGTGATCGCGATCGTGGACCTGGAGGCCTGA
Upstream 100 bases:
>100_bases GCTCCTGCCGCTCGGACCTGCCCGGCACGAACGGGACGGCGCACCCCGCCGTACCCGTCGCGGACACCGGCCCCACCCAC ACCCCGGAGGTAGCACTGCC
Downstream 100 bases:
>100_bases CCGCTTCGCCGGCGCGCCGCCGGTCGTCGGGTCGATCGAGATCCTCCAGGACGACGGGTCGCTGCCGCCGGCGTACCGGC CGCTGCTGGTTTCCGCGACG
Product: barbiturase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 371; Mature: 370
Protein sequence:
>371_residues MTRPIEVRKVPIEHVSDAAGLADLIDAGVFSADDVIAVVGKTEGNGGVNDYTRIISTHAYRAVLEEKGTRSKEEVAQVPL VWSGGTDGVISPHATIFAYAPEGRYLPTDEPRVTVGYAMSEVLLPEDIGRPAMVEKVAAGVRVAMERAGITDPADVHYVQ TKTPLLVQDTINDAERRGETVYTHNTLESMDVSNATTALGIAVALGEIEMPTAEQIFHDLSLYSSVASCSSGVELDQAQI VVVGNARGVGGRFRVGHSIMKDALDMDGVWAAIRDAGLDDMPVDCIHPRHIKGRLVNLFLKCEADPTGRVRGRRNIMLDD SDVAWHRQIKACVGGVVAAVSGDPMNFVSVAAVHQGPSGGGPVIAIVDLEA
Sequences:
>Translated_371_residues MTRPIEVRKVPIEHVSDAAGLADLIDAGVFSADDVIAVVGKTEGNGGVNDYTRIISTHAYRAVLEEKGTRSKEEVAQVPL VWSGGTDGVISPHATIFAYAPEGRYLPTDEPRVTVGYAMSEVLLPEDIGRPAMVEKVAAGVRVAMERAGITDPADVHYVQ TKTPLLVQDTINDAERRGETVYTHNTLESMDVSNATTALGIAVALGEIEMPTAEQIFHDLSLYSSVASCSSGVELDQAQI VVVGNARGVGGRFRVGHSIMKDALDMDGVWAAIRDAGLDDMPVDCIHPRHIKGRLVNLFLKCEADPTGRVRGRRNIMLDD SDVAWHRQIKACVGGVVAAVSGDPMNFVSVAAVHQGPSGGGPVIAIVDLEA >Mature_370_residues TRPIEVRKVPIEHVSDAAGLADLIDAGVFSADDVIAVVGKTEGNGGVNDYTRIISTHAYRAVLEEKGTRSKEEVAQVPLV WSGGTDGVISPHATIFAYAPEGRYLPTDEPRVTVGYAMSEVLLPEDIGRPAMVEKVAAGVRVAMERAGITDPADVHYVQT KTPLLVQDTINDAERRGETVYTHNTLESMDVSNATTALGIAVALGEIEMPTAEQIFHDLSLYSSVASCSSGVELDQAQIV VVGNARGVGGRFRVGHSIMKDALDMDGVWAAIRDAGLDDMPVDCIHPRHIKGRLVNLFLKCEADPTGRVRGRRNIMLDDS DVAWHRQIKACVGGVVAAVSGDPMNFVSVAAVHQGPSGGGPVIAIVDLEA
Specific function: Cleaves the barbituric acid ring to yield ureidomalonic acid [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014086 [H]
Pfam domain/function: PF09663 Amido_AtzD_TrzD [H]
EC number: =3.5.2.1 [H]
Molecular weight: Translated: 39465; Mature: 39334
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPIEVRKVPIEHVSDAAGLADLIDAGVFSADDVIAVVGKTEGNGGVNDYTRIISTHAY CCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH RAVLEEKGTRSKEEVAQVPLVWSGGTDGVISPHATIFAYAPEGRYLPTDEPRVTVGYAMS HHHHHHCCCCCHHHHHHCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHH EVLLPEDIGRPAMVEKVAAGVRVAMERAGITDPADVHYVQTKTPLLVQDTINDAERRGET HHHCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEHHHHHHHHCCCE VYTHNTLESMDVSNATTALGIAVALGEIEMPTAEQIFHDLSLYSSVASCSSGVELDQAQI EEEECCHHHCCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCEEE VVVGNARGVGGRFRVGHSIMKDALDMDGVWAAIRDAGLDDMPVDCIHPRHIKGRLVNLFL EEEECCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCHHCEEEEEEE KCEADPTGRVRGRRNIMLDDSDVAWHRQIKACVGGVVAAVSGDPMNFVSVAAVHQGPSGG EECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCCEEEEEEECCCCCC GPVIAIVDLEA CCEEEEEEECC >Mature Secondary Structure TRPIEVRKVPIEHVSDAAGLADLIDAGVFSADDVIAVVGKTEGNGGVNDYTRIISTHAY CCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH RAVLEEKGTRSKEEVAQVPLVWSGGTDGVISPHATIFAYAPEGRYLPTDEPRVTVGYAMS HHHHHHCCCCCHHHHHHCCEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEHHHH EVLLPEDIGRPAMVEKVAAGVRVAMERAGITDPADVHYVQTKTPLLVQDTINDAERRGET HHHCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEHHHHHHHHCCCE VYTHNTLESMDVSNATTALGIAVALGEIEMPTAEQIFHDLSLYSSVASCSSGVELDQAQI EEEECCHHHCCCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCEEE VVVGNARGVGGRFRVGHSIMKDALDMDGVWAAIRDAGLDDMPVDCIHPRHIKGRLVNLFL EEEECCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCHHCEEEEEEE KCEADPTGRVRGRRNIMLDDSDVAWHRQIKACVGGVVAAVSGDPMNFVSVAAVHQGPSGG EECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHEEEEECCCCCCCEEEEEEECCCCCC GPVIAIVDLEA CCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11748240 [H]