| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119718351
Identifier: 119718351
GI number: 119718351
Start: 4364359
End: 4364808
Strand: Reverse
Name: 119718351
Synonym: Noca_4132
Alternate gene names: NA
Gene position: 4364808-4364359 (Counterclockwise)
Preceding gene: 119718352
Following gene: 119718350
Centisome position: 87.54
GC content: 73.56
Gene sequence:
>450_bases ATGACCACGACCCGCCTCGTCGATGACTCGCTGTTCGCCGCCGACGCCGACGACCCCGGCCACGGTGGCGTGCCGAGCCT GCTGGGCTCGCGGTGCGCTGACTGCGGCACCACCACCTTCCCGCGGCAGGACGGCTGCCCGCGCTGCGGCGGGGCGAGCA TGCCCGAGGTCGTGCTGCCGCGCGAGGGCACCATCTGGTCGGCGACCGTCCAGCACTTCGAGCCCAAGCCGCCGTTCCGG CACGACGGCGAGTACGTCCCGTTCGGGATGGGCTACGTCGACCTCGGCGAGGTGATCGTCGTGGCGCGCTTCACGGAGAA CGACCCGGCGCGGCTCGGCATCGGGACGCCGGTGGCCCTGTGTGCGGTGCCCGCCTGGACCGACGAGGACGGCACCCGGG TCCTCACCTACGGGTTCGCGCCCACCGGCGCGGCCGGACAGGAGAAGTGA
Upstream 100 bases:
>100_bases CGTCGTACACGACGGGCGCGGTGCTGCCCGTCGACGGCGGCCGCGGTGTCGTCAGCTTCGGCTCAGCCTGAGCGCCGTCC CGACCTCCCGAGGAGCCCCG
Downstream 100 bases:
>100_bases CCATGAGCAACGACGTCGCGATCGTCGGGATCGGGATGACCAAGTTCGGCCGGCAGCCCGGGGTCACCGGCCGCCAGATG GCGGTGTCGGCGGTCCACGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MTTTRLVDDSLFAADADDPGHGGVPSLLGSRCADCGTTTFPRQDGCPRCGGASMPEVVLPREGTIWSATVQHFEPKPPFR HDGEYVPFGMGYVDLGEVIVVARFTENDPARLGIGTPVALCAVPAWTDEDGTRVLTYGFAPTGAAGQEK
Sequences:
>Translated_149_residues MTTTRLVDDSLFAADADDPGHGGVPSLLGSRCADCGTTTFPRQDGCPRCGGASMPEVVLPREGTIWSATVQHFEPKPPFR HDGEYVPFGMGYVDLGEVIVVARFTENDPARLGIGTPVALCAVPAWTDEDGTRVLTYGFAPTGAAGQEK >Mature_148_residues TTTRLVDDSLFAADADDPGHGGVPSLLGSRCADCGTTTFPRQDGCPRCGGASMPEVVLPREGTIWSATVQHFEPKPPFRH DGEYVPFGMGYVDLGEVIVVARFTENDPARLGIGTPVALCAVPAWTDEDGTRVLTYGFAPTGAAGQEK
Specific function: Unknown
COG id: COG1545
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15742; Mature: 15611
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTRLVDDSLFAADADDPGHGGVPSLLGSRCADCGTTTFPRQDGCPRCGGASMPEVVLP CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC REGTIWSATVQHFEPKPPFRHDGEYVPFGMGYVDLGEVIVVARFTENDPARLGIGTPVAL CCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCEEECCCCHHH CAVPAWTDEDGTRVLTYGFAPTGAAGQEK HEECCCCCCCCCEEEEECCCCCCCCCCCC >Mature Secondary Structure TTTRLVDDSLFAADADDPGHGGVPSLLGSRCADCGTTTFPRQDGCPRCGGASMPEVVLP CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEC REGTIWSATVQHFEPKPPFRHDGEYVPFGMGYVDLGEVIVVARFTENDPARLGIGTPVAL CCCCEEEEEHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECCCCCCEEECCCCHHH CAVPAWTDEDGTRVLTYGFAPTGAAGQEK HEECCCCCCCCCEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA