Click here to switch to the map view.

The map label for this gene is prt1 [H]

Identifier: 119718275

GI number: 119718275

Start: 4278426

End: 4279718

Strand: Reverse

Name: prt1 [H]

Synonym: Noca_4056

Alternate gene names: 119718275

Gene position: 4279718-4278426 (Counterclockwise)

Preceding gene: 119718276

Following gene: 119718273

Centisome position: 85.84

GC content: 76.26

Gene sequence:

>1293_bases
ATGAGCTGCCGCTTCGTGCCGCCGTACCTGCTGCGCCGGGTCGCGCCCGAGAGCCTGCTGGTCGACGAGCGGCTGCGGAG
CGGCCGGACGGTGCCGGCCGCCGACCGGCGCTCGGTCCTGCCGGCGGGCGGTGCGGCGTGGACCGTGCACACCGCGGACC
ACACGACCACCCTGCCGGGGCAGGTGGTGCGGTCGGCCGGCGATCCCGAGGTCGGTGACGCCGCCGTCGACGAGGCGGCC
TCCGGCATCACCGGGGCGCTCGCGCTGTTCGCGGAGGTCTACGGCCGCTCGTCGTACGACGGGGCCGGCGCGCCGGTCAG
CCTGACGGTCCACTACGGCCGCGACTACGACAACGCGTTCTGGGACGGCACGCAGCTGGTGTTCGGCGACGGGGACGGCC
GGGTCTTCGGCCGGTTCACCGCTCCGGTGGACGTCCTCGGGCACGAGCTCACGCACGCGGTCACCGAGCACACCGCCGGG
CTGCGCTACCGCGATCAGCCCGGCGCGCTGAACGAGTCGGTCTCCGACGTCTTCGCGGCCTGCCTCAAGCAGCGGCTGCT
CGGGCAGACCGCGGCCGAGGCCGACTGGCTGATCGGCGCCGGGATCTTCCTGCCCGGCATCCACGCCCGCGCGCTGCGCG
ACATGGCCGCGCCCGGCACGGCGTACGACGACCCCGCGCTGGGTCGCGACCCCCAGGTGGGCCACCTGCGCGACTACGTC
GACACCGCCGACGACAACGGCGGCGTGCACCTCAACTCGGGCATCCCCAACCGGGCCTTCCAGCTCGCCGCGACCGCCAT
CGGCGGCTCGACGTGGGACGGCGCCGGCCGGGTCTGGTACGACGCGCTCGTCGGCGGCGCCGTCGGCGCGGGCACGGACT
TCGCGGGCTTCGCCGCCGCGACGGTCGCCGCCGCGGGCGCGCACGCCGAGGCGGTGCGCGGTGCGTGGGCGGAGGTGGGG
GTCACGCCGGAGGGTGGTGTCGTTCCGGCCGGGGCGGGGTCAGCCGGCGGGTCAGCAGGTGGGTCGCGGCGGGTGAGCGT
GCGGCGTACCGGCGGCTTCGCGGGCCTGCGCGCCGCCGGCGAGCTCGACCTCGACGGCGACGACCCGCGGGCCGCGGAGG
TCGCCGACCTGGTCGACCGGGTGGACCTGGGCGTCGTGGCCCCCGGCGACCCACAACCCGACCGGTACGTCTACTCCTTC
GACCTCTGCGGCTCCTGTGCCACCGTCCCCGAGCAGCACCTCACCCCCGACCTCGCCCGCCTGGTGGAGCTGCTCCTGGA
CGGTAGTCCCTGA

Upstream 100 bases:

>100_bases
CGCGGCGATGTCCTCGGTGTTCGTGCGGTTCGGGTCCAGCCCGATGATCTACGGCTACAGCATCCTGGTGGACCGGACCG
GCGGGTGACACGCTGGCGGG

Downstream 100 bases:

>100_bases
CGGTTGCGGGGTGTGGGAGCGCGCCCAGACCACGTATACGTCAGGGACTATCGCTCGGGATCAGGCGAGGGCGCGGTCGA
GGGCGGCCGCGACGTGGAGG

Product: peptidase M4, thermolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MSCRFVPPYLLRRVAPESLLVDERLRSGRTVPAADRRSVLPAGGAAWTVHTADHTTTLPGQVVRSAGDPEVGDAAVDEAA
SGITGALALFAEVYGRSSYDGAGAPVSLTVHYGRDYDNAFWDGTQLVFGDGDGRVFGRFTAPVDVLGHELTHAVTEHTAG
LRYRDQPGALNESVSDVFAACLKQRLLGQTAAEADWLIGAGIFLPGIHARALRDMAAPGTAYDDPALGRDPQVGHLRDYV
DTADDNGGVHLNSGIPNRAFQLAATAIGGSTWDGAGRVWYDALVGGAVGAGTDFAGFAAATVAAAGAHAEAVRGAWAEVG
VTPEGGVVPAGAGSAGGSAGGSRRVSVRRTGGFAGLRAAGELDLDGDDPRAAEVADLVDRVDLGVVAPGDPQPDRYVYSF
DLCGSCATVPEQHLTPDLARLVELLLDGSP

Sequences:

>Translated_430_residues
MSCRFVPPYLLRRVAPESLLVDERLRSGRTVPAADRRSVLPAGGAAWTVHTADHTTTLPGQVVRSAGDPEVGDAAVDEAA
SGITGALALFAEVYGRSSYDGAGAPVSLTVHYGRDYDNAFWDGTQLVFGDGDGRVFGRFTAPVDVLGHELTHAVTEHTAG
LRYRDQPGALNESVSDVFAACLKQRLLGQTAAEADWLIGAGIFLPGIHARALRDMAAPGTAYDDPALGRDPQVGHLRDYV
DTADDNGGVHLNSGIPNRAFQLAATAIGGSTWDGAGRVWYDALVGGAVGAGTDFAGFAAATVAAAGAHAEAVRGAWAEVG
VTPEGGVVPAGAGSAGGSAGGSRRVSVRRTGGFAGLRAAGELDLDGDDPRAAEVADLVDRVDLGVVAPGDPQPDRYVYSF
DLCGSCATVPEQHLTPDLARLVELLLDGSP
>Mature_429_residues
SCRFVPPYLLRRVAPESLLVDERLRSGRTVPAADRRSVLPAGGAAWTVHTADHTTTLPGQVVRSAGDPEVGDAAVDEAAS
GITGALALFAEVYGRSSYDGAGAPVSLTVHYGRDYDNAFWDGTQLVFGDGDGRVFGRFTAPVDVLGHELTHAVTEHTAGL
RYRDQPGALNESVSDVFAACLKQRLLGQTAAEADWLIGAGIFLPGIHARALRDMAAPGTAYDDPALGRDPQVGHLRDYVD
TADDNGGVHLNSGIPNRAFQLAATAIGGSTWDGAGRVWYDALVGGAVGAGTDFAGFAAATVAAAGAHAEAVRGAWAEVGV
TPEGGVVPAGAGSAGGSAGGSRRVSVRRTGGFAGLRAAGELDLDGDDPRAAEVADLVDRVDLGVVAPGDPQPDRYVYSFD
LCGSCATVPEQHLTPDLARLVELLLDGSP

Specific function: Unknown

COG id: COG3227

COG function: function code E; Zinc metalloprotease (elastase)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013856
- InterPro:   IPR001570 [H]

Pfam domain/function: PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]

EC number: NA

Molecular weight: Translated: 44272; Mature: 44141

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCRFVPPYLLRRVAPESLLVDERLRSGRTVPAADRRSVLPAGGAAWTVHTADHTTTLPG
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCH
QVVRSAGDPEVGDAAVDEAASGITGALALFAEVYGRSSYDGAGAPVSLTVHYGRDYDNAF
HHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
WDGTQLVFGDGDGRVFGRFTAPVDVLGHELTHAVTEHTAGLRYRDQPGALNESVSDVFAA
CCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHH
CLKQRLLGQTAAEADWLIGAGIFLPGIHARALRDMAAPGTAYDDPALGRDPQVGHLRDYV
HHHHHHHCCHHCCCCCEEECHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
DTADDNGGVHLNSGIPNRAFQLAATAIGGSTWDGAGRVWYDALVGGAVGAGTDFAGFAAA
HCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH
TVAAAGAHAEAVRGAWAEVGVTPEGGVVPAGAGSAGGSAGGSRRVSVRRTGGFAGLRAAG
HHHHHCCHHHHHHCHHHHCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
ELDLDGDDPRAAEVADLVDRVDLGVVAPGDPQPDRYVYSFDLCGSCATVPEQHLTPDLAR
CCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCCCCCHHHCCHHHHH
LVELLLDGSP
HHHHHHCCCC
>Mature Secondary Structure 
SCRFVPPYLLRRVAPESLLVDERLRSGRTVPAADRRSVLPAGGAAWTVHTADHTTTLPG
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCH
QVVRSAGDPEVGDAAVDEAASGITGALALFAEVYGRSSYDGAGAPVSLTVHYGRDYDNAF
HHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCC
WDGTQLVFGDGDGRVFGRFTAPVDVLGHELTHAVTEHTAGLRYRDQPGALNESVSDVFAA
CCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHH
CLKQRLLGQTAAEADWLIGAGIFLPGIHARALRDMAAPGTAYDDPALGRDPQVGHLRDYV
HHHHHHHCCHHCCCCCEEECHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH
DTADDNGGVHLNSGIPNRAFQLAATAIGGSTWDGAGRVWYDALVGGAVGAGTDFAGFAAA
HCCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH
TVAAAGAHAEAVRGAWAEVGVTPEGGVVPAGAGSAGGSAGGSRRVSVRRTGGFAGLRAAG
HHHHHCCHHHHHHCHHHHCCCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
ELDLDGDDPRAAEVADLVDRVDLGVVAPGDPQPDRYVYSFDLCGSCATVPEQHLTPDLAR
CCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCCCCCHHHCCHHHHH
LVELLLDGSP
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1917878 [H]