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The map label for this gene is yjfH [C]

Identifier: 119718239

GI number: 119718239

Start: 4245178

End: 4246122

Strand: Reverse

Name: yjfH [C]

Synonym: Noca_4020

Alternate gene names: 119718239

Gene position: 4246122-4245178 (Counterclockwise)

Preceding gene: 119718240

Following gene: 119718238

Centisome position: 85.16

GC content: 74.81

Gene sequence:

>945_bases
ATGGCAGGCAACAGCCAGCGCAAGGGCGCGATCAAGAAGTCCGGCAAGGGCAACCCCACCGCCGGCTCCGGCGGCCGGGT
CCGCCGCGGCCTGGAGGGCAAGGGCCCGACCCCGAAGGCCAAGGATCGGCCCTACCACCAGGCCCACAAGGCCGCGAAGC
GCGCCGAGAAGTCCGCGACCCGGCGCCCCAAGCGCAAGACCGCCGGCGACGCCGAGTGGGTCGCCGGGCGCAACTCGGTC
GTCGAGGCGCTGCGCGCCGGGGTCCCGGTGACCGGCGTGTACGTCGCCGAGGGGGCCGAGCGGGACGGCCGGCTGCGCGA
GGCGTTCGCGACGGCGGCCGAGCGGCGGCTGAACATCCAGGAGGTCAGCCGCGGCGAGCTGGACCGGATGACCGGCGGCG
CGGTCCACCAGGGGCTGGCCGCCCGGATCCCGCCGTACGAGTACGCCCATCCCGACGACCTGCTCGACGCCGCGGCGGAG
AGCGGTGCGCCGCCGCTGATCGTGGCGCTGGACTCGGTCACCGACCCGCGCAACCTGGGTGCCGTGGTGCGCAGCGCGTC
CGGCTTCGGCGCACACGGCGTCGTGATCCCCGAGCGCCGTTCGGCCGGGATGACCGCGTCGGCCTGGAAGACGAGTGCCG
GCGCGGCCGCCCGCCTCCCCGTGGCCCAGACCGTCAACCTGGTCCGCCAGCTCAAGGCCTACCAGGAGGCCGGCTGCATG
GTCGTCGGCCTGGCGGCCGACGGCGACGTCAGCCTGCCCGACCTCGACCTGGCCGACGGGCCACTGGTGGTCGTCGTCGG
CTCGGAGGGCAGCGGCCTGTCCCGCCTGGTCAGCGAGACCTGCGACCAGCTCGTATCGATCCCGATGGCCAACCAGTTGG
AGTCCCTCAACGCCGGCGTCGCCGCCTCGGTGGCGCTCTACGCCATCTCGGAGGCGCGTCGCTGA

Upstream 100 bases:

>100_bases
GAGACTTCGTGTCGGCGGATGCGATCCGGGACCGACTGCATGCGGTCGGCGTCCAGCTCGAAGACACCCCCGACGGACCG
AAGTGGAGCCTCTCCTAGTC

Downstream 100 bases:

>100_bases
GCATCAGGCGGATCCCACGGGCCCTGGCGTACGTCGGGGTCTGGTTCGCCTGCTCGGCCGCGATCGCGCTGCTGCTCTTC
CTCACCAGCAGCCGCTCCAT

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAGNSQRKGAIKKSGKGNPTAGSGGRVRRGLEGKGPTPKAKDRPYHQAHKAAKRAEKSATRRPKRKTAGDAEWVAGRNSV
VEALRAGVPVTGVYVAEGAERDGRLREAFATAAERRLNIQEVSRGELDRMTGGAVHQGLAARIPPYEYAHPDDLLDAAAE
SGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEAGCM
VVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGVAASVALYAISEARR

Sequences:

>Translated_314_residues
MAGNSQRKGAIKKSGKGNPTAGSGGRVRRGLEGKGPTPKAKDRPYHQAHKAAKRAEKSATRRPKRKTAGDAEWVAGRNSV
VEALRAGVPVTGVYVAEGAERDGRLREAFATAAERRLNIQEVSRGELDRMTGGAVHQGLAARIPPYEYAHPDDLLDAAAE
SGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEAGCM
VVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGVAASVALYAISEARR
>Mature_313_residues
AGNSQRKGAIKKSGKGNPTAGSGGRVRRGLEGKGPTPKAKDRPYHQAHKAAKRAEKSATRRPKRKTAGDAEWVAGRNSVV
EALRAGVPVTGVYVAEGAERDGRLREAFATAAERRLNIQEVSRGELDRMTGGAVHQGLAARIPPYEYAHPDDLLDAAAES
GAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEAGCMV
VGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGVAASVALYAISEARR

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=227, Percent_Identity=32.15859030837, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI1790623, Length=238, Percent_Identity=39.0756302521008, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1788935, Length=205, Percent_Identity=27.8048780487805, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555908, Length=288, Percent_Identity=28.8194444444444, Blast_Score=94, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 32564; Mature: 32433

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNSQRKGAIKKSGKGNPTAGSGGRVRRGLEGKGPTPKAKDRPYHQAHKAAKRAEKSAT
CCCCCCCCCCHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RRPKRKTAGDAEWVAGRNSVVEALRAGVPVTGVYVAEGAERDGRLREAFATAAERRLNIQ
CCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCHH
EVSRGELDRMTGGAVHQGLAARIPPYEYAHPDDLLDAAAESGAPPLIVALDSVTDPRNLG
HHHCCHHHHHCCHHHHHCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
AVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEAGCM
HHHHCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCE
VVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGV
EEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCH
AASVALYAISEARR
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AGNSQRKGAIKKSGKGNPTAGSGGRVRRGLEGKGPTPKAKDRPYHQAHKAAKRAEKSAT
CCCCCCCCCHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RRPKRKTAGDAEWVAGRNSVVEALRAGVPVTGVYVAEGAERDGRLREAFATAAERRLNIQ
CCCCCCCCCCHHHHCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCHH
EVSRGELDRMTGGAVHQGLAARIPPYEYAHPDDLLDAAAESGAPPLIVALDSVTDPRNLG
HHHCCHHHHHCCHHHHHCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
AVVRSASGFGAHGVVIPERRSAGMTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEAGCM
HHHHCCCCCCCCCEEECCCCCCCCCHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCE
VVGLAADGDVSLPDLDLADGPLVVVVGSEGSGLSRLVSETCDQLVSIPMANQLESLNAGV
EEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCH
AASVALYAISEARR
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA