| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718183
Identifier: 119718183
GI number: 119718183
Start: 4178023
End: 4178991
Strand: Reverse
Name: 119718183
Synonym: Noca_3964
Alternate gene names: NA
Gene position: 4178991-4178023 (Counterclockwise)
Preceding gene: 119718184
Following gene: 119718180
Centisome position: 83.82
GC content: 72.76
Gene sequence:
>969_bases ATGCAGATCCCCCAGCCTCGCGGTCCGCTCACCGAGGAGCTCTTCGGCGCCCTCCGGGCCGGCTCGGACGACTTCTACCC GGTCCTCGCGGTCGGCGCCTCGGAGGGCGAGGACGCCGCCCTGGCGCTCTGGGCGCTCCACGAGCTGCACTACCGCGGGT TCGACGAGGTCCGTGACGACCTGGAGTGGGACCCGCAGCTGGTGCGGCTGCGTGGGCTGCTGGAGCGCGACCTCGAGCAG CGGCTGTGGGAGCGCTTCACGCCGCCCGTGGGTCTCTCCTTCGTCGAGGACTTCTTCGGGTGGGTCGCCGAGCAGGACGG CGCCTCGGTCGCCACGCACGTGCAGCGCGACGCCGACCGCGAGCAGGTCCTCGAGCTCCTCCGGGTGCGCTCGATCTACC ACCTCAAGGAGTCCGACCCCGCCGCGTGGGTCGTGCCCCGCCTCGGCGTGCGGGCCAAGGCCGCGCTGATGGAGCTCCAG TACGACGAGTACGGCGGCGGCGACCCCAACCGGCTGCACCACCACCTGTTCGCGCAGGGCATGGAGGCCAGCGGGCTGGC GGCGTCGTACGGCGCCCACGTCGACGAGGTGCCCCTGGAGGTGCTCGAGCAGAACAACGCGATGTCGCTCTTCGGCCTGC ACCGGCGCCTGCGTGGCGCGGCCCTGGGCCATCTGGCGGCGTTCGAGGCGACCAGCTCGCTGCCGTCGCGGCGGATGGTG CAGGGCCTGGAGCGGCTCGGCTTCCCCGAGGAGGTGGTGGCCTACTACGCCGAGCACGTGGAGGCGGACGCGGTCCACGA GCAGCTGGCGGTGCGCACCATCTGCGGCGGCCTGCTGGCCGAGGAGCCGGGTCTCGAGGAGGACGTGTGGTTCGGGGCGT TCACCTGCCTGGACCTCGAGGACCGGTTCGCCGGCACGATGCTCGAGCGCTGGGGAGTCGGCGAGGAGCGGAAGGAGGAG GTCGCGTGA
Upstream 100 bases:
>100_bases GCGGTCTCGATACGCGCTGGCGCCCGCTGCTCGACCAGCGACCTTCGGGATCAGCGCGCCGGTAGGCATGGCTGCAAATC CGGGCGGGTACTCACCGCGC
Downstream 100 bases:
>100_bases GTGGGTGCTACGACCATCCGGATGTGGTGCTCTGCCCCGGCGGACCGATGCTGCTGCGCGGCCAGCACACCATCGAGGAT CCCGCCGGGGTCGCCCACGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 322; Mature: 322
Protein sequence:
>322_residues MQIPQPRGPLTEELFGALRAGSDDFYPVLAVGASEGEDAALALWALHELHYRGFDEVRDDLEWDPQLVRLRGLLERDLEQ RLWERFTPPVGLSFVEDFFGWVAEQDGASVATHVQRDADREQVLELLRVRSIYHLKESDPAAWVVPRLGVRAKAALMELQ YDEYGGGDPNRLHHHLFAQGMEASGLAASYGAHVDEVPLEVLEQNNAMSLFGLHRRLRGAALGHLAAFEATSSLPSRRMV QGLERLGFPEEVVAYYAEHVEADAVHEQLAVRTICGGLLAEEPGLEEDVWFGAFTCLDLEDRFAGTMLERWGVGEERKEE VA
Sequences:
>Translated_322_residues MQIPQPRGPLTEELFGALRAGSDDFYPVLAVGASEGEDAALALWALHELHYRGFDEVRDDLEWDPQLVRLRGLLERDLEQ RLWERFTPPVGLSFVEDFFGWVAEQDGASVATHVQRDADREQVLELLRVRSIYHLKESDPAAWVVPRLGVRAKAALMELQ YDEYGGGDPNRLHHHLFAQGMEASGLAASYGAHVDEVPLEVLEQNNAMSLFGLHRRLRGAALGHLAAFEATSSLPSRRMV QGLERLGFPEEVVAYYAEHVEADAVHEQLAVRTICGGLLAEEPGLEEDVWFGAFTCLDLEDRFAGTMLERWGVGEERKEE VA >Mature_322_residues MQIPQPRGPLTEELFGALRAGSDDFYPVLAVGASEGEDAALALWALHELHYRGFDEVRDDLEWDPQLVRLRGLLERDLEQ RLWERFTPPVGLSFVEDFFGWVAEQDGASVATHVQRDADREQVLELLRVRSIYHLKESDPAAWVVPRLGVRAKAALMELQ YDEYGGGDPNRLHHHLFAQGMEASGLAASYGAHVDEVPLEVLEQNNAMSLFGLHRRLRGAALGHLAAFEATSSLPSRRMV QGLERLGFPEEVVAYYAEHVEADAVHEQLAVRTICGGLLAEEPGLEEDVWFGAFTCLDLEDRFAGTMLERWGVGEERKEE VA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36040; Mature: 36040
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIPQPRGPLTEELFGALRAGSDDFYPVLAVGASEGEDAALALWALHELHYRGFDEVRDD CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHC LEWDPQLVRLRGLLERDLEQRLWERFTPPVGLSFVEDFFGWVAEQDGASVATHVQRDADR CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCH EQVLELLRVRSIYHLKESDPAAWVVPRLGVRAKAALMELQYDEYGGGDPNRLHHHLFAQG HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC MEASGLAASYGAHVDEVPLEVLEQNNAMSLFGLHRRLRGAALGHLAAFEATSSLPSRRMV CCCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QGLERLGFPEEVVAYYAEHVEADAVHEQLAVRTICGGLLAEEPGLEEDVWFGAFTCLDLE HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEECCH DRFAGTMLERWGVGEERKEEVA HHHHHHHHHHHCCCHHHHHCCC >Mature Secondary Structure MQIPQPRGPLTEELFGALRAGSDDFYPVLAVGASEGEDAALALWALHELHYRGFDEVRDD CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHC LEWDPQLVRLRGLLERDLEQRLWERFTPPVGLSFVEDFFGWVAEQDGASVATHVQRDADR CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCH EQVLELLRVRSIYHLKESDPAAWVVPRLGVRAKAALMELQYDEYGGGDPNRLHHHLFAQG HHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC MEASGLAASYGAHVDEVPLEVLEQNNAMSLFGLHRRLRGAALGHLAAFEATSSLPSRRMV CCCCCCHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH QGLERLGFPEEVVAYYAEHVEADAVHEQLAVRTICGGLLAEEPGLEEDVWFGAFTCLDLE HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEEECCH DRFAGTMLERWGVGEERKEEVA HHHHHHHHHHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA