| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119718071
Identifier: 119718071
GI number: 119718071
Start: 4069801
End: 4070685
Strand: Reverse
Name: 119718071
Synonym: Noca_3851
Alternate gene names: NA
Gene position: 4070685-4069801 (Counterclockwise)
Preceding gene: 119718072
Following gene: 119718070
Centisome position: 81.64
GC content: 76.84
Gene sequence:
>885_bases ATGGGCACGCGGCAGGGTCGTTCGAGTCGTTCGGGCCAACCGGGTCGGTGGCGGTGGTGGGCGGCGCAGGTCGCGGTGCC GCTGCTGGTGGCCGCCTGCGGGACGCCGGGCTCGGACCCCGGCGCGGCCCGGGACGCGACGCCTGAGCCCACGCAGGCCT CCACCCCGGCGTCCCCGCCGGATCCGAGTGGCCAGGCCTACGCACCGGGCACGATGCCCGACCTCGTCGGGCTCGGCTCG GCCGAGGCCGGCCGCTTGCTCGGCGCGCTCGAGCTGGGCTCGGAGTGGAGCACCGTCGCCGTGCGCTGCGAGGCCCGGCC CGGCACCGTCGTCCGCCAGGCACCGGCCGCCGGCTCGGTGCTCACCGACCACACGGTGGTGCGGCTGCGCACCGCGACTC TCGACCTCGAGGCGTTCCGCGGGCCCTGCGAGGCCGAGGAGCTCGGGCCCGTGACGGGCGCGGACGCCGTGCTGGCCCGC AAGCTCTACCGGTTCGCGGCCGACCCCTCGGTCGGGGCGCCGTTCGTCGCCGGTGAGGTGTGGACCGGCATCGAGGACGG CCTGGCGTCGACGACCGTCGGCGCCGCGGAGCGGACCGACCTCGCCGCCTGGCAGCTCGACGCGGAGTACGCCGAGCGCG GCGGCCCGTTCTCGGCGCTGGACGTCCTGGCGAGCAGCGGCGGGTACTACGAGCTGCACCGCGGCATCGTCGGCACCTGC CCGGGCGGCAACGCGAAGGCGCCGGCCGGGCTCGCCGGGCTGCGCGCGATCAGCCTCACCGTCCCCGAGGACGCGATCGA CTCCTGCCTGCAGTGGTGGGGCGTGACCGTGTTCTTGGACCACGACCAGATCCGCGGCGTCGCGCTCCGGCTCGGATCGC CGTGA
Upstream 100 bases:
>100_bases GGTCGACCCCCTCGCCGCGCGCGCCGCGCGCCTGAGCGGTCCGGTAAACCCGGCGGCTCCACCGCGCGTCCCACTTGTAG GACACCAGGGGAGGCGCGAG
Downstream 100 bases:
>100_bases CCCTGGCCGACGCAGGGCCGGCGGTGGCCCAGCAACCGTCCGGGGGTCGGGTTCGGCTGCCTGGGCACCGCTGGCCGGCG GCAACCGGTTACTGGTCGGT
Product: PASTA domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MGTRQGRSSRSGQPGRWRWWAAQVAVPLLVAACGTPGSDPGAARDATPEPTQASTPASPPDPSGQAYAPGTMPDLVGLGS AEAGRLLGALELGSEWSTVAVRCEARPGTVVRQAPAAGSVLTDHTVVRLRTATLDLEAFRGPCEAEELGPVTGADAVLAR KLYRFAADPSVGAPFVAGEVWTGIEDGLASTTVGAAERTDLAAWQLDAEYAERGGPFSALDVLASSGGYYELHRGIVGTC PGGNAKAPAGLAGLRAISLTVPEDAIDSCLQWWGVTVFLDHDQIRGVALRLGSP
Sequences:
>Translated_294_residues MGTRQGRSSRSGQPGRWRWWAAQVAVPLLVAACGTPGSDPGAARDATPEPTQASTPASPPDPSGQAYAPGTMPDLVGLGS AEAGRLLGALELGSEWSTVAVRCEARPGTVVRQAPAAGSVLTDHTVVRLRTATLDLEAFRGPCEAEELGPVTGADAVLAR KLYRFAADPSVGAPFVAGEVWTGIEDGLASTTVGAAERTDLAAWQLDAEYAERGGPFSALDVLASSGGYYELHRGIVGTC PGGNAKAPAGLAGLRAISLTVPEDAIDSCLQWWGVTVFLDHDQIRGVALRLGSP >Mature_293_residues GTRQGRSSRSGQPGRWRWWAAQVAVPLLVAACGTPGSDPGAARDATPEPTQASTPASPPDPSGQAYAPGTMPDLVGLGSA EAGRLLGALELGSEWSTVAVRCEARPGTVVRQAPAAGSVLTDHTVVRLRTATLDLEAFRGPCEAEELGPVTGADAVLARK LYRFAADPSVGAPFVAGEVWTGIEDGLASTTVGAAERTDLAAWQLDAEYAERGGPFSALDVLASSGGYYELHRGIVGTCP GGNAKAPAGLAGLRAISLTVPEDAIDSCLQWWGVTVFLDHDQIRGVALRLGSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30265; Mature: 30134
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTRQGRSSRSGQPGRWRWWAAQVAVPLLVAACGTPGSDPGAARDATPEPTQASTPASPP CCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC DPSGQAYAPGTMPDLVGLGSAEAGRLLGALELGSEWSTVAVRCEARPGTVVRQAPAAGSV CCCCCCCCCCCCHHHHCCCCCCHHHHEEHHHCCCCCCEEEEEEECCCCCEEEECCCCCCE LTDHTVVRLRTATLDLEAFRGPCEAEELGPVTGADAVLARKLYRFAADPSVGAPFVAGEV ECCCEEEEEEEEEEEHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCHH WTGIEDGLASTTVGAAERTDLAAWQLDAEYAERGGPFSALDVLASSGGYYELHRGIVGTC HCCHHHCHHHHHCCCCCCCCHHEEEECHHHHHCCCCHHHHHHHHCCCCEEEECCCEEEEC PGGNAKAPAGLAGLRAISLTVPEDAIDSCLQWWGVTVFLDHDQIRGVALRLGSP CCCCCCCCCCHHCEEEEEEECCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCC >Mature Secondary Structure GTRQGRSSRSGQPGRWRWWAAQVAVPLLVAACGTPGSDPGAARDATPEPTQASTPASPP CCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC DPSGQAYAPGTMPDLVGLGSAEAGRLLGALELGSEWSTVAVRCEARPGTVVRQAPAAGSV CCCCCCCCCCCCHHHHCCCCCCHHHHEEHHHCCCCCCEEEEEEECCCCCEEEECCCCCCE LTDHTVVRLRTATLDLEAFRGPCEAEELGPVTGADAVLARKLYRFAADPSVGAPFVAGEV ECCCEEEEEEEEEEEHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCHH WTGIEDGLASTTVGAAERTDLAAWQLDAEYAERGGPFSALDVLASSGGYYELHRGIVGTC HCCHHHCHHHHHCCCCCCCCHHEEEECHHHHHCCCCHHHHHHHHCCCCEEEECCCEEEEC PGGNAKAPAGLAGLRAISLTVPEDAIDSCLQWWGVTVFLDHDQIRGVALRLGSP CCCCCCCCCCHHCEEEEEEECCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA