Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

Click here to switch to the map view.

The map label for this gene is 119718070

Identifier: 119718070

GI number: 119718070

Start: 4069225

End: 4069689

Strand: Reverse

Name: 119718070

Synonym: Noca_3850

Alternate gene names: NA

Gene position: 4069689-4069225 (Counterclockwise)

Preceding gene: 119718071

Following gene: 119718067

Centisome position: 81.62

GC content: 70.54

Gene sequence:

>465_bases
ATGAGCCAAGTCCTGACGATGTGGCAGAGGACGAGCGCGGTCCCCGTGGTGGGCAGCCGGCTGTTCTCGGTGCTGTTCGC
GCAGAAGGCGCCGTACTTCGCCTCGATCCGCCCGCGCTTCCTGAGCATCGAGCCGAACCGGGTCGAGCTGCTGATCCCCA
AGCGACGCCGGGTCCACAACCACCTCGGGACCGTGCACGCGATCGCGCTGTGCAACGGGCTCGAGGCCGCGATGGGGGCG
CTCGCCGAGGCCACGATCCCCGCCGACAGGCGCTGGATCCCCAAGGGGATGGAGGTCGCCTACACCGCCAAGGCCACCAG
CGACATCGTGTGCGTCGCCGAGACCGACCCCGAGCAGTGGGTGTCGGGCGACCCGGACCTGCCCGTGCGGGTGCACGGCA
TCCGCGACGACGGCACCGTCGTGATCGAGGGCGTGATCCGGCTCTGGGTCACCCCGCGGTCGTGA

Upstream 100 bases:

>100_bases
GCAGGGCCGGCGGTGGCCCAGCAACCGTCCGGGGGTCGGGTTCGGCTGCCTGGGCACCGCTGGCCGGCGGCAACCGGTTA
CTGGTCGGTAATATCACCGC

Downstream 100 bases:

>100_bases
GGAAGATCGGGTTCGTCAGCGCCACCATCTGCCCGGTGGCCGACTCCCGGCGTACCTCCGCCCGGACGAACGCCGTCCCA
CCGGGCACCGCGGCGTCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: Thioesterase; Phenylacetic Acid Degradation-Like Protein; Thioesterase Superfamily Protein

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSQVLTMWQRTSAVPVVGSRLFSVLFAQKAPYFASIRPRFLSIEPNRVELLIPKRRRVHNHLGTVHAIALCNGLEAAMGA
LAEATIPADRRWIPKGMEVAYTAKATSDIVCVAETDPEQWVSGDPDLPVRVHGIRDDGTVVIEGVIRLWVTPRS

Sequences:

>Translated_154_residues
MSQVLTMWQRTSAVPVVGSRLFSVLFAQKAPYFASIRPRFLSIEPNRVELLIPKRRRVHNHLGTVHAIALCNGLEAAMGA
LAEATIPADRRWIPKGMEVAYTAKATSDIVCVAETDPEQWVSGDPDLPVRVHGIRDDGTVVIEGVIRLWVTPRS
>Mature_153_residues
SQVLTMWQRTSAVPVVGSRLFSVLFAQKAPYFASIRPRFLSIEPNRVELLIPKRRRVHNHLGTVHAIALCNGLEAAMGAL
AEATIPADRRWIPKGMEVAYTAKATSDIVCVAETDPEQWVSGDPDLPVRVHGIRDDGTVVIEGVIRLWVTPRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17037; Mature: 16906

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLTMWQRTSAVPVVGSRLFSVLFAQKAPYFASIRPRFLSIEPNRVELLIPKRRRVHN
CCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCCEEEEECCCEEEEEECCHHHHHH
HLGTVHAIALCNGLEAAMGALAEATIPADRRWIPKGMEVAYTAKATSDIVCVAETDPEQW
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCHHHH
VSGDPDLPVRVHGIRDDGTVVIEGVIRLWVTPRS
CCCCCCCCEEEEEECCCCEEEEEEEEEEEEECCC
>Mature Secondary Structure 
SQVLTMWQRTSAVPVVGSRLFSVLFAQKAPYFASIRPRFLSIEPNRVELLIPKRRRVHN
CHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECCCCEEEEECCCEEEEEECCHHHHHH
HLGTVHAIALCNGLEAAMGALAEATIPADRRWIPKGMEVAYTAKATSDIVCVAETDPEQW
HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCHHHH
VSGDPDLPVRVHGIRDDGTVVIEGVIRLWVTPRS
CCCCCCCCEEEEEECCCCEEEEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA