| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717892
Identifier: 119717892
GI number: 119717892
Start: 3892771
End: 3893409
Strand: Reverse
Name: 119717892
Synonym: Noca_3670
Alternate gene names: NA
Gene position: 3893409-3892771 (Counterclockwise)
Preceding gene: 119717893
Following gene: 119717890
Centisome position: 78.09
GC content: 74.96
Gene sequence:
>639_bases ATGAGGACCCTGCTCGCCGCGGTCGCCCTGCTGCTCGCCGCGCCGCTCTTGGCGGCGTGCGGCGACGAGGGGGACACGAC GGCCACCGACCCGGGCAGCAGCGACCCGGGCAGCTCCCGGCCGGCCCGGATGCCCACCGAGATCCCGGCCGCCCGGGGGA CCGTGCACACCAGTGGCCTGGTCACCGTGATGGACAAGGGCAGCCCCGAGCTGTGCCTCGGCGCGGTCGCCGAGTCCTGG CCCCCGCAGTGCGGCGGCCCGCCGATCGAGGGCTGGGACTGGGCCGACCACCACGGCGTGTTCGAGCGCCAGCAGCAGGT CCGGTGGGGCCAGTTCGTGGTCACCGGTACGTGGGACGGCAGCACCTTCGGCTACCAGGACGCGGTTCCGGCCGCGCTCT ACGACGCGATGCCGATCGAGGAGGTGCCGCTCCCGGCGCCCGCCGTCGAGCACACCCAGGCCGAGCTGGAGGACATCGCC GGGGAGGTCGGCGACCTGCCCGGCGCCCAGGGGGCGTACGCCGACGCCGGGCAGGTGCTCGTCGACGTGGTCTACGACGA CGGCTCGCTGCAGGCCTGGGCCGACGCCACCTACGGCACGGACGTGGTCATCGTGCGGCCCGCCCTGATCGACTCCTAG
Upstream 100 bases:
>100_bases ACCGAGCTGGTCCACCGGCTGCCCTGAGCCGGGCGACGGAGCCGGATCCGGGCCGGACCAGACCAGGGAACCGGCCCGGG TCCGGTCGCGTCGTACCGCC
Downstream 100 bases:
>100_bases CCGCTCAGGCAGTGCGGGTCGTGTGCCTCAGCACGCGCCATGGCGCGTGCTGAGGCACACGACCCATCGCCGCCGGCCCG GTCTCGGCGGAGCTGGGTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 212; Mature: 212
Protein sequence:
>212_residues MRTLLAAVALLLAAPLLAACGDEGDTTATDPGSSDPGSSRPARMPTEIPAARGTVHTSGLVTVMDKGSPELCLGAVAESW PPQCGGPPIEGWDWADHHGVFERQQQVRWGQFVVTGTWDGSTFGYQDAVPAALYDAMPIEEVPLPAPAVEHTQAELEDIA GEVGDLPGAQGAYADAGQVLVDVVYDDGSLQAWADATYGTDVVIVRPALIDS
Sequences:
>Translated_212_residues MRTLLAAVALLLAAPLLAACGDEGDTTATDPGSSDPGSSRPARMPTEIPAARGTVHTSGLVTVMDKGSPELCLGAVAESW PPQCGGPPIEGWDWADHHGVFERQQQVRWGQFVVTGTWDGSTFGYQDAVPAALYDAMPIEEVPLPAPAVEHTQAELEDIA GEVGDLPGAQGAYADAGQVLVDVVYDDGSLQAWADATYGTDVVIVRPALIDS >Mature_212_residues MRTLLAAVALLLAAPLLAACGDEGDTTATDPGSSDPGSSRPARMPTEIPAARGTVHTSGLVTVMDKGSPELCLGAVAESW PPQCGGPPIEGWDWADHHGVFERQQQVRWGQFVVTGTWDGSTFGYQDAVPAALYDAMPIEEVPLPAPAVEHTQAELEDIA GEVGDLPGAQGAYADAGQVLVDVVYDDGSLQAWADATYGTDVVIVRPALIDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22079; Mature: 22079
Theoretical pI: Translated: 3.80; Mature: 3.80
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTLLAAVALLLAAPLLAACGDEGDTTATDPGSSDPGSSRPARMPTEIPAARGTVHTSGL CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCE VTVMDKGSPELCLGAVAESWPPQCGGPPIEGWDWADHHGVFERQQQVRWGQFVVTGTWDG EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCC STFGYQDAVPAALYDAMPIEEVPLPAPAVEHTQAELEDIAGEVGDLPGAQGAYADAGQVL CCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE VDVVYDDGSLQAWADATYGTDVVIVRPALIDS EEEEECCCCEEEEECCCCCCCEEEECCHHCCC >Mature Secondary Structure MRTLLAAVALLLAAPLLAACGDEGDTTATDPGSSDPGSSRPARMPTEIPAARGTVHTSGL CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCE VTVMDKGSPELCLGAVAESWPPQCGGPPIEGWDWADHHGVFERQQQVRWGQFVVTGTWDG EEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEECCC STFGYQDAVPAALYDAMPIEEVPLPAPAVEHTQAELEDIAGEVGDLPGAQGAYADAGQVL CCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE VDVVYDDGSLQAWADATYGTDVVIVRPALIDS EEEEECCCCEEEEECCCCCCCEEEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA