| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717816
Identifier: 119717816
GI number: 119717816
Start: 3813831
End: 3814307
Strand: Reverse
Name: 119717816
Synonym: Noca_3594
Alternate gene names: NA
Gene position: 3814307-3813831 (Counterclockwise)
Preceding gene: 119717817
Following gene: 119717815
Centisome position: 76.5
GC content: 72.54
Gene sequence:
>477_bases ATGAGCCTCCCGGACCGCAAGCTGATCAAGGACGTCTTCGAGGGCCTGCTCGGCCGCGACGTCGCCGTGGGCGATGGTGC CCCGGTCACCCTCGACCCGCCCCGGCCTGTGGTCGCGGCGTACGTCGACCCCCAGCACAACCTGGCCACCATCGCCGTGA TGGACCTGCCGCTGGCGGCGTACGCCGGCGCCGCCCTCGCGCTGATCCCCAAGGGCGGCGCAGACGCGGCCGTCGAGGAC GGCCTGCTGCCCGACAACCTGTTCGAGAACGTCTCGGAGATCCTGAACGTGCTCGCAGCGCCCATCGGCGACTGCGCCGG GGTGCACCAGCGGCTGTCGTCGACCTTCGCCCCGCACGACCCGCTGCCCCCGCAGATCGCGTCGTGCGCGGCCACACCGG GCGTCCGCGAGGACGTGGCCCTCGAGATCGCCGGCTACGGCAGTGGCACGCTCTCGGTGGTGACGGTCGTCGTCTGA
Upstream 100 bases:
>100_bases CCGCCGCGGAAGCGGGCGCGCTGTTCCTCATCGCCAAGCCGTTCACCCCCGAGCACTTCGAGTCCGCGCTCGCCGGCATG CTGGGCTGAGGGGCGCGACG
Downstream 100 bases:
>100_bases GACCGGGGGTCCCGACACGTAGGCTGGCGGACAGCATGAGCATCTCGATCCCCCTGCCCGGCATGCCCGCCACCCCCACG TCCGACGGGCCGGAGCCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MSLPDRKLIKDVFEGLLGRDVAVGDGAPVTLDPPRPVVAAYVDPQHNLATIAVMDLPLAAYAGAALALIPKGGADAAVED GLLPDNLFENVSEILNVLAAPIGDCAGVHQRLSSTFAPHDPLPPQIASCAATPGVREDVALEIAGYGSGTLSVVTVVV
Sequences:
>Translated_158_residues MSLPDRKLIKDVFEGLLGRDVAVGDGAPVTLDPPRPVVAAYVDPQHNLATIAVMDLPLAAYAGAALALIPKGGADAAVED GLLPDNLFENVSEILNVLAAPIGDCAGVHQRLSSTFAPHDPLPPQIASCAATPGVREDVALEIAGYGSGTLSVVTVVV >Mature_157_residues SLPDRKLIKDVFEGLLGRDVAVGDGAPVTLDPPRPVVAAYVDPQHNLATIAVMDLPLAAYAGAALALIPKGGADAAVEDG LLPDNLFENVSEILNVLAAPIGDCAGVHQRLSSTFAPHDPLPPQIASCAATPGVREDVALEIAGYGSGTLSVVTVVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16110; Mature: 15978
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPDRKLIKDVFEGLLGRDVAVGDGAPVTLDPPRPVVAAYVDPQHNLATIAVMDLPLAA CCCCHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCEEEEEECCCCCEEEEEEECCCHHH YAGAALALIPKGGADAAVEDGLLPDNLFENVSEILNVLAAPIGDCAGVHQRLSSTFAPHD HCCCEEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC PLPPQIASCAATPGVREDVALEIAGYGSGTLSVVTVVV CCCHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEC >Mature Secondary Structure SLPDRKLIKDVFEGLLGRDVAVGDGAPVTLDPPRPVVAAYVDPQHNLATIAVMDLPLAA CCCHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCEEEEEECCCCCEEEEEEECCCHHH YAGAALALIPKGGADAAVEDGLLPDNLFENVSEILNVLAAPIGDCAGVHQRLSSTFAPHD HCCCEEEEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC PLPPQIASCAATPGVREDVALEIAGYGSGTLSVVTVVV CCCHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA