| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is icd [H]
Identifier: 119717797
GI number: 119717797
Start: 3792669
End: 3794882
Strand: Reverse
Name: icd [H]
Synonym: Noca_3575
Alternate gene names: 119717797
Gene position: 3794882-3792669 (Counterclockwise)
Preceding gene: 119717799
Following gene: 119717796
Centisome position: 76.11
GC content: 69.96
Gene sequence:
>2214_bases ATGGCCACGATCATCTACACCCACACCGACGAGGCGCCGCTGCTCGCGACGTACTCGTTCCTGCCGATCATCCAGGCGTA CGCCGCGAAGGCCGGTGTGGAGGTGGAGACCCGCGACATCTCCCTCGCGGGCCGGATCATCGCCCAGTTCCCCGACCGCC TGACCGCCGAGCAGCGGATCGACGACGCGCTGGCCGAGCTCGGCGAGCTGGCCAAGCGGCCCGAGGCCAACATCATCAAG CTGCCGAACGTCTCCGCCTCCGTCCCGCAGCTCAAGACCGCGATCAAGGAGCTCCAGGAGCAGGGCTACGACCTGCCCGA CTACCCCGAGAACCCGCAGACCGACGAGGACCGGGACGTCCGGGCGCGCTACGACAAGGTCAAGGGCTCGGCGGTCAACC CGGTGCTGCGGCAGGGCAACTCCGACCGCCGTGCGCCCGCGTCGGTCAAGCAGTACGCGAAGGCCTACCCGCATCGGATG GGCGCGTGGAGCACCGACTCCAAGACCAACGTCGCCACCATGGGCGAGCACGACTTCAAGACCAACGAGAAGTCCGTGGT GCTCGCCGCCGACGACACCCTGCGCATCGAGCTCGAGGCCGCGGACGGCACCACGACCGTGCTCAAGGAGTCACTGCCGG TCCTGGCCGGTGAGGTCGTGGACGCCACGACCCTCCAGGTCGCCCACCTGCACGGCTTCCTGCGCAACGCGATCGCCCGC GCGAAGAGCGAGGGCGTGCTGTTCAGCGTCCACCTCAAGGCGACGATGATGAAGGTCTCCGACCCGATCATCTTCGGCCA TGTGGTGCGGGCCTTCTTCGAGCCGGTCTTCGCGAAGTACGGCGACGACCTCGCCGCGGCCGGCCTCAGTCCGAACGACG GCCTCGGCGCCATCCTCGGCGGGCTGGACAAGCTCTCGAACGGCGCCGAGATCAAGGCGGCCTTCGAGCAGGCGATCGCC GACGGCCCCGCGCTCGCGATGGTCGACTCCGACCGCGGTATCACCAACCTGCACGTGCCCTCCGACGTGATCGTGGACGC CTCGATGCCGGCGATGATCCGCACCTCCGGCCACATGTGGGGCCCCGACGGCCAGGAGGCCGACACCCTGGCCGTGATCC CGGACTCCTCCTACGCCGGGGTCTACCAGACGGTGATCGACGACTGCCGCGAGCACGGCGCGTTCGACCCGGCGACGATG GGCTCGGTGCCGAACGTCGGCCTGATGGCCCAGGCGGCCGAGGAGTACGGCTCCCACGACAAGACCTTCGAGATCCCCAC CGACGGCACCGTGCGGGTCCTCGACTCCTCGGGCGCGGTCCTCATCGAGCACGACGTCGCGGCCGGCGACATCTGGCGCG CCTGCCAGACCAAGGACGCGCCGATCCGCGACTGGGTCAAGCTCGCCGTGACCCGCGCCCGCGCGACCGGTGCGCCGGCG GTCTTCTGGCTAGACGAGACCCGCGCCCACGACGCCAGCCTGATCACGAAGGTCAACGCCTACCTGCCCGAGCACGACAC CGAGGGCCTGGACATCAAGATCCTGGCGCCCGAGCTGGCGACGGCGTACTCCCTCGAGCGGATCCGCCGTGGCGAGGACA CCATCTCGGTGACCGGCAACGTGCTGCGCGACTACAACACCGACCTGTTCCCGATCCTCGAGCTCGGCACCTCCGCGAAG ATGCTCTCGGTCGTGCCGCTGATGGCCGGCGGCGGGCTGTTCGAGACCGGCGCCGGGGGCTCGGCGCCCAAGCACGTCCA GCAGCTGCTCAAGGAGAACTACCTGCGCTGGGACAGCCTCGGTGAGTTCTTCGCGCTCGCGGCGTCCTTCGAGCACCTCT CCGGGTACGCCGCCAACCCGGGAGCCCAGGTCCTCGCCGACACCCTGGACCGCGCGACGGGCACTTTCCTGGACCGGGAC AAGTCGCCGACCCGCAAGCTGGGCGGCATCGACAACCGCGGCTCGCACTTCTACCTGGCGCTGTATTGGGCGCAGGAGCT GGCGGCCCAGACCGAGGACGCCGACCTCGCGGCCGCGTTCAAGCCGCTGGCCGAGACGCTCGCCGCGCAGGAGCAGCAGA TCGTCGAGGAGCTGCTCGCCGTGCAGGGCTCTCCGGCCGACATCGGCGGCTACTACCGGCCCGACGACGCCTTGGCGTCC GCGGTGATGCGGCCCTCGGCGACCCTGAACGAGGCGCTGGCCTCCCTTGGCTGA
Upstream 100 bases:
>100_bases GGCTGGACCTGCCTCGAGAGCCGGTGCGAAGGTGGCTCCGTCGGACCCGTCAGGTATCTTGACGTCAAGCAACTTTCTCG AGCTTCAGGAGTCGTCGCGC
Downstream 100 bases:
>100_bases CGCCGGCCCCGACCCGACGCCCGACGAGCGGGACCAGACCTACGACCGCTGGTCCCGCACGCAGGCGCTGAGCAACCGCG GGTACCTGATCGCCGCGGTC
Product: isocitrate dehydrogenase, NADP-dependent
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 737; Mature: 736
Protein sequence:
>737_residues MATIIYTHTDEAPLLATYSFLPIIQAYAAKAGVEVETRDISLAGRIIAQFPDRLTAEQRIDDALAELGELAKRPEANIIK LPNVSASVPQLKTAIKELQEQGYDLPDYPENPQTDEDRDVRARYDKVKGSAVNPVLRQGNSDRRAPASVKQYAKAYPHRM GAWSTDSKTNVATMGEHDFKTNEKSVVLAADDTLRIELEAADGTTTVLKESLPVLAGEVVDATTLQVAHLHGFLRNAIAR AKSEGVLFSVHLKATMMKVSDPIIFGHVVRAFFEPVFAKYGDDLAAAGLSPNDGLGAILGGLDKLSNGAEIKAAFEQAIA DGPALAMVDSDRGITNLHVPSDVIVDASMPAMIRTSGHMWGPDGQEADTLAVIPDSSYAGVYQTVIDDCREHGAFDPATM GSVPNVGLMAQAAEEYGSHDKTFEIPTDGTVRVLDSSGAVLIEHDVAAGDIWRACQTKDAPIRDWVKLAVTRARATGAPA VFWLDETRAHDASLITKVNAYLPEHDTEGLDIKILAPELATAYSLERIRRGEDTISVTGNVLRDYNTDLFPILELGTSAK MLSVVPLMAGGGLFETGAGGSAPKHVQQLLKENYLRWDSLGEFFALAASFEHLSGYAANPGAQVLADTLDRATGTFLDRD KSPTRKLGGIDNRGSHFYLALYWAQELAAQTEDADLAAAFKPLAETLAAQEQQIVEELLAVQGSPADIGGYYRPDDALAS AVMRPSATLNEALASLG
Sequences:
>Translated_737_residues MATIIYTHTDEAPLLATYSFLPIIQAYAAKAGVEVETRDISLAGRIIAQFPDRLTAEQRIDDALAELGELAKRPEANIIK LPNVSASVPQLKTAIKELQEQGYDLPDYPENPQTDEDRDVRARYDKVKGSAVNPVLRQGNSDRRAPASVKQYAKAYPHRM GAWSTDSKTNVATMGEHDFKTNEKSVVLAADDTLRIELEAADGTTTVLKESLPVLAGEVVDATTLQVAHLHGFLRNAIAR AKSEGVLFSVHLKATMMKVSDPIIFGHVVRAFFEPVFAKYGDDLAAAGLSPNDGLGAILGGLDKLSNGAEIKAAFEQAIA DGPALAMVDSDRGITNLHVPSDVIVDASMPAMIRTSGHMWGPDGQEADTLAVIPDSSYAGVYQTVIDDCREHGAFDPATM GSVPNVGLMAQAAEEYGSHDKTFEIPTDGTVRVLDSSGAVLIEHDVAAGDIWRACQTKDAPIRDWVKLAVTRARATGAPA VFWLDETRAHDASLITKVNAYLPEHDTEGLDIKILAPELATAYSLERIRRGEDTISVTGNVLRDYNTDLFPILELGTSAK MLSVVPLMAGGGLFETGAGGSAPKHVQQLLKENYLRWDSLGEFFALAASFEHLSGYAANPGAQVLADTLDRATGTFLDRD KSPTRKLGGIDNRGSHFYLALYWAQELAAQTEDADLAAAFKPLAETLAAQEQQIVEELLAVQGSPADIGGYYRPDDALAS AVMRPSATLNEALASLG >Mature_736_residues ATIIYTHTDEAPLLATYSFLPIIQAYAAKAGVEVETRDISLAGRIIAQFPDRLTAEQRIDDALAELGELAKRPEANIIKL PNVSASVPQLKTAIKELQEQGYDLPDYPENPQTDEDRDVRARYDKVKGSAVNPVLRQGNSDRRAPASVKQYAKAYPHRMG AWSTDSKTNVATMGEHDFKTNEKSVVLAADDTLRIELEAADGTTTVLKESLPVLAGEVVDATTLQVAHLHGFLRNAIARA KSEGVLFSVHLKATMMKVSDPIIFGHVVRAFFEPVFAKYGDDLAAAGLSPNDGLGAILGGLDKLSNGAEIKAAFEQAIAD GPALAMVDSDRGITNLHVPSDVIVDASMPAMIRTSGHMWGPDGQEADTLAVIPDSSYAGVYQTVIDDCREHGAFDPATMG SVPNVGLMAQAAEEYGSHDKTFEIPTDGTVRVLDSSGAVLIEHDVAAGDIWRACQTKDAPIRDWVKLAVTRARATGAPAV FWLDETRAHDASLITKVNAYLPEHDTEGLDIKILAPELATAYSLERIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKM LSVVPLMAGGGLFETGAGGSAPKHVQQLLKENYLRWDSLGEFFALAASFEHLSGYAANPGAQVLADTLDRATGTFLDRDK SPTRKLGGIDNRGSHFYLALYWAQELAAQTEDADLAAAFKPLAETLAAQEQQIVEELLAVQGSPADIGGYYRPDDALASA VMRPSATLNEALASLG
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 79133; Mature: 79002
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIIYTHTDEAPLLATYSFLPIIQAYAAKAGVEVETRDISLAGRIIAQFPDRLTAEQRI CCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCHHHHHHHHH DDALAELGELAKRPEANIIKLPNVSASVPQLKTAIKELQEQGYDLPDYPENPQTDEDRDV HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH RARYDKVKGSAVNPVLRQGNSDRRAPASVKQYAKAYPHRMGAWSTDSKTNVATMGEHDFK HHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCEEECCCCCCC TNEKSVVLAADDTLRIELEAADGTTTVLKESLPVLAGEVVDATTLQVAHLHGFLRNAIAR CCCCEEEEEECCEEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AKSEGVLFSVHLKATMMKVSDPIIFGHVVRAFFEPVFAKYGDDLAAAGLSPNDGLGAILG HCCCCEEEEEEEHEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHH GLDKLSNGAEIKAAFEQAIADGPALAMVDSDRGITNLHVPSDVIVDASMPAMIRTSGHMW HHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCEEECCCCCCCEECCCCCC GPDGQEADTLAVIPDSSYAGVYQTVIDDCREHGAFDPATMGSVPNVGLMAQAAEEYGSHD CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHCCCC KTFEIPTDGTVRVLDSSGAVLIEHDVAAGDIWRACQTKDAPIRDWVKLAVTRARATGAPA CEEECCCCCEEEEEECCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCE VFWLDETRAHDASLITKVNAYLPEHDTEGLDIKILAPELATAYSLERIRRGEDTISVTGN EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECHH VLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQLLKENYLRWDSL HHHHCCCCCCHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHH GEFFALAASFEHLSGYAANPGAQVLADTLDRATGTFLDRDKSPTRKLGGIDNRGSHFYLA HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCHHHHCCCCCCCCEEEEE LYWAQELAAQTEDADLAAAFKPLAETLAAQEQQIVEELLAVQGSPADIGGYYRPDDALAS EEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH AVMRPSATLNEALASLG HHHCCCHHHHHHHHHCC >Mature Secondary Structure ATIIYTHTDEAPLLATYSFLPIIQAYAAKAGVEVETRDISLAGRIIAQFPDRLTAEQRI CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHCCHHHHHHHHH DDALAELGELAKRPEANIIKLPNVSASVPQLKTAIKELQEQGYDLPDYPENPQTDEDRDV HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH RARYDKVKGSAVNPVLRQGNSDRRAPASVKQYAKAYPHRMGAWSTDSKTNVATMGEHDFK HHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCEEECCCCCCC TNEKSVVLAADDTLRIELEAADGTTTVLKESLPVLAGEVVDATTLQVAHLHGFLRNAIAR CCCCEEEEEECCEEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AKSEGVLFSVHLKATMMKVSDPIIFGHVVRAFFEPVFAKYGDDLAAAGLSPNDGLGAILG HCCCCEEEEEEEHEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHH GLDKLSNGAEIKAAFEQAIADGPALAMVDSDRGITNLHVPSDVIVDASMPAMIRTSGHMW HHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEECCCCEEECCCCCCCEECCCCCC GPDGQEADTLAVIPDSSYAGVYQTVIDDCREHGAFDPATMGSVPNVGLMAQAAEEYGSHD CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHCCCC KTFEIPTDGTVRVLDSSGAVLIEHDVAAGDIWRACQTKDAPIRDWVKLAVTRARATGAPA CEEECCCCCEEEEEECCCCEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCE VFWLDETRAHDASLITKVNAYLPEHDTEGLDIKILAPELATAYSLERIRRGEDTISVTGN EEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEECHH VLRDYNTDLFPILELGTSAKMLSVVPLMAGGGLFETGAGGSAPKHVQQLLKENYLRWDSL HHHHCCCCCCHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCHHHH GEFFALAASFEHLSGYAANPGAQVLADTLDRATGTFLDRDKSPTRKLGGIDNRGSHFYLA HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHCCCCCCHHHHCCCCCCCCEEEEE LYWAQELAAQTEDADLAAAFKPLAETLAAQEQQIVEELLAVQGSPADIGGYYRPDDALAS EEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH AVMRPSATLNEALASLG HHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7836312; 12948626 [H]