| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717799
Identifier: 119717799
GI number: 119717799
Start: 3796036
End: 3796713
Strand: Reverse
Name: 119717799
Synonym: Noca_3577
Alternate gene names: NA
Gene position: 3796713-3796036 (Counterclockwise)
Preceding gene: 119717801
Following gene: 119717797
Centisome position: 76.15
GC content: 75.66
Gene sequence:
>678_bases GTGCGGCCCCTCCTCCTGGCGGCCGCACTCGCCGTCCTGGCCGGCTGTGGCACCGCATCGGCGCCGAGCCCGCCGGCCGG GGTGGACGAGCTCACGATCCCCACCCCGTCCCCGGACCCCGGCGACTTCGTCGCGACCGTGGACAACCCCTGGTTCCCGC TCGAGGCCGGCGATTCGTGGGTCTACGCCGTCACCGACGCCGAGGGCGCGCACCGGATGCGGGTCACCGTGGAGACCGGC CCGGAGGTCGCCGGCGTGGCCACGACCAGCCGCGTGACGACCGAGCCGTCCGGGGTCGTCACCGACTGGTTCGCGCAGGA CGAGCGCGGCAACGTGTGGTGGTTCGGCCGCGCCGGCAGCTGGCGGGCGGGGGAGGACGGCGCCGAGGCGGGCATCGCGA TGCTGGCTCGGCCCCGGGTCGGTGACGGCTACCGGACGGGCTACCTGGAGGGAGTCGTGGAGGACACGGCCCGCGTGGTG TCGCTGGACGAGAGCGCCGAGGTCGCCGCCGGGTCGTACGACGACCTCCTGCTCCTCGAGCAGCAGAGCGCGCTCGAGCC CGGGGCCACGGCCGAGCTCTCCTACGGCCGGGACGTGGGTCTGGTGGAGGCCCGGCTGGTCTCCGACAGCTACCGGACCG TGCGGCTGGTGCGGGGACCTACTCCGCCGGCGGCCTGA
Upstream 100 bases:
>100_bases CCTTCAACGGGGTAGAGCTCACGACGACTCCTTCACGCGACGGTTTCTCGTCCCGACGCTAGCAGCGGCTCCGCCTCCTG CGATGCTGGGGTCCATGACC
Downstream 100 bases:
>100_bases TCCGGGTCCCGCCGTCGTCCGACTCATCCTGGGCCGCCTGCTCGGCCGCCTGCTGGACGCGCCACTGCTCGGGCGTCTGC CCCACGGGGTGCCACTGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MRPLLLAAALAVLAGCGTASAPSPPAGVDELTIPTPSPDPGDFVATVDNPWFPLEAGDSWVYAVTDAEGAHRMRVTVETG PEVAGVATTSRVTTEPSGVVTDWFAQDERGNVWWFGRAGSWRAGEDGAEAGIAMLARPRVGDGYRTGYLEGVVEDTARVV SLDESAEVAAGSYDDLLLLEQQSALEPGATAELSYGRDVGLVEARLVSDSYRTVRLVRGPTPPAA
Sequences:
>Translated_225_residues MRPLLLAAALAVLAGCGTASAPSPPAGVDELTIPTPSPDPGDFVATVDNPWFPLEAGDSWVYAVTDAEGAHRMRVTVETG PEVAGVATTSRVTTEPSGVVTDWFAQDERGNVWWFGRAGSWRAGEDGAEAGIAMLARPRVGDGYRTGYLEGVVEDTARVV SLDESAEVAAGSYDDLLLLEQQSALEPGATAELSYGRDVGLVEARLVSDSYRTVRLVRGPTPPAA >Mature_225_residues MRPLLLAAALAVLAGCGTASAPSPPAGVDELTIPTPSPDPGDFVATVDNPWFPLEAGDSWVYAVTDAEGAHRMRVTVETG PEVAGVATTSRVTTEPSGVVTDWFAQDERGNVWWFGRAGSWRAGEDGAEAGIAMLARPRVGDGYRTGYLEGVVEDTARVV SLDESAEVAAGSYDDLLLLEQQSALEPGATAELSYGRDVGLVEARLVSDSYRTVRLVRGPTPPAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23572; Mature: 23572
Theoretical pI: Translated: 4.04; Mature: 4.04
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLLLAAALAVLAGCGTASAPSPPAGVDELTIPTPSPDPGDFVATVDNPWFPLEAGDSW CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCEEEEECCCCE VYAVTDAEGAHRMRVTVETGPEVAGVATTSRVTTEPSGVVTDWFAQDERGNVWWFGRAGS EEEEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEECCCCCCCEEEEECCCC WRAGEDGAEAGIAMLARPRVGDGYRTGYLEGVVEDTARVVSLDESAEVAAGSYDDLLLLE CCCCCCCHHCCEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEE QQSALEPGATAELSYGRDVGLVEARLVSDSYRTVRLVRGPTPPAA CCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCC >Mature Secondary Structure MRPLLLAAALAVLAGCGTASAPSPPAGVDELTIPTPSPDPGDFVATVDNPWFPLEAGDSW CCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCEEEEECCCCE VYAVTDAEGAHRMRVTVETGPEVAGVATTSRVTTEPSGVVTDWFAQDERGNVWWFGRAGS EEEEECCCCCEEEEEEEECCCCEEEEEECCEEEECCCCCEEEEECCCCCCCEEEEECCCC WRAGEDGAEAGIAMLARPRVGDGYRTGYLEGVVEDTARVVSLDESAEVAAGSYDDLLLLE CCCCCCCHHCCEEEEECCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCEEEEE QQSALEPGATAELSYGRDVGLVEARLVSDSYRTVRLVRGPTPPAA CCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA