Click here to switch to the map view.

The map label for this gene is 119717778

Identifier: 119717778

GI number: 119717778

Start: 3771803

End: 3772342

Strand: Reverse

Name: 119717778

Synonym: Noca_3556

Alternate gene names: NA

Gene position: 3772342-3771803 (Counterclockwise)

Preceding gene: 119717779

Following gene: 119717777

Centisome position: 75.66

GC content: 70.19

Gene sequence:

>540_bases
GTGTCGACGATTGGCGTAGCGCTCGCGATCCCGGAGCCCTGGGCCTCTGAGCTGCAGGACTACCGGAAGGCCGTCGGCGA
CCACACCGCCGCGATGATCCCCACCCACATCACGCTGGTCCCGCCGACCGAGATCGACCCGGGCCAGGCGGCGGAGGTCG
AGAGGCATCTCGAGGACGTCGCCGCGGGTGCCGACCCGTTCCGGGTGCACCTGCGCGGCACCGGCACCTTCCGACCGGTC
TCACCGGTGGTCTTCGTGACCCTGGTGGAGGGCATCTCTCGCTGCGAGCAGCTCGCCAAGGCCCTGCGCCGGGGACCGCT
CGACGCGGAGCTGCAGTACCCCTACCACCCGCACGTGACCATCGCCCATCACCTCGGCGACGACCTGCTGGACCAGGCCT
TCGAGGAGCTCGCCGGGTTCGAGTGCCAGTTCGAGGCCGAGCGCTTCCACCTCTACGTGCACGACGACCGGACCGGCTGG
CGACCCACTCGCGATTTCCCTCTCCAGGCTGGCAACCAAACGCCTCCGCGCGGCGTCTGA

Upstream 100 bases:

>100_bases
CGCCGGGGCGCGGAGCAGGCCGGCGCCGTGGCGGCCACGACCCTGCGCGACGTCTACCAGCGGGTCGGCTTCGTCGCGGC
GGGCCAGTAGGGTCTGCCAC

Downstream 100 bases:

>100_bases
CCTGCGTAGCATCCAGCTAGCGGAGGTCGGACATGAGTCGTCGGCGTCGAGTTGCACATGAGCAGGCACTCCGGCAGAGG
GTGGCTCGGGCCAAGGAGCA

Product: 2',5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSTIGVALAIPEPWASELQDYRKAVGDHTAAMIPTHITLVPPTEIDPGQAAEVERHLEDVAAGADPFRVHLRGTGTFRPV
SPVVFVTLVEGISRCEQLAKALRRGPLDAELQYPYHPHVTIAHHLGDDLLDQAFEELAGFECQFEAERFHLYVHDDRTGW
RPTRDFPLQAGNQTPPRGV

Sequences:

>Translated_179_residues
MSTIGVALAIPEPWASELQDYRKAVGDHTAAMIPTHITLVPPTEIDPGQAAEVERHLEDVAAGADPFRVHLRGTGTFRPV
SPVVFVTLVEGISRCEQLAKALRRGPLDAELQYPYHPHVTIAHHLGDDLLDQAFEELAGFECQFEAERFHLYVHDDRTGW
RPTRDFPLQAGNQTPPRGV
>Mature_178_residues
STIGVALAIPEPWASELQDYRKAVGDHTAAMIPTHITLVPPTEIDPGQAAEVERHLEDVAAGADPFRVHLRGTGTFRPVS
PVVFVTLVEGISRCEQLAKALRRGPLDAELQYPYHPHVTIAHHLGDDLLDQAFEELAGFECQFEAERFHLYVHDDRTGWR
PTRDFPLQAGNQTPPRGV

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 19874; Mature: 19742

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIGVALAIPEPWASELQDYRKAVGDHTAAMIPTHITLVPPTEIDPGQAAEVERHLEDV
CCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCHHHHHHHHHHH
AAGADPFRVHLRGTGTFRPVSPVVFVTLVEGISRCEQLAKALRRGPLDAELQYPYHPHVT
HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEE
IAHHLGDDLLDQAFEELAGFECQFEAERFHLYVHDDRTGWRPTRDFPLQAGNQTPPRGV
EHHHCCHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STIGVALAIPEPWASELQDYRKAVGDHTAAMIPTHITLVPPTEIDPGQAAEVERHLEDV
CCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCHHHHHHHHHHH
AAGADPFRVHLRGTGTFRPVSPVVFVTLVEGISRCEQLAKALRRGPLDAELQYPYHPHVT
HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEE
IAHHLGDDLLDQAFEELAGFECQFEAERFHLYVHDDRTGWRPTRDFPLQAGNQTPPRGV
EHHHCCHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]