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The map label for this gene is ycdB [C]

Identifier: 119717610

GI number: 119717610

Start: 3591395

End: 3591769

Strand: Reverse

Name: ycdB [C]

Synonym: Noca_3387

Alternate gene names: 119717610

Gene position: 3591769-3591395 (Counterclockwise)

Preceding gene: 119717611

Following gene: 119717608

Centisome position: 72.04

GC content: 70.13

Gene sequence:

>375_bases
ATGCGCACCCCCCGGACCAAGGACACCGGCGCGCCGCTCTCGGGCGGCCGCGAGTTCAGCGAGCCGGACTTCACGATGCC
CGGCAGCGACGGCCCGGTCATCCCACGCGACTCCCACGTCCGGGTGGTGCACCCCGACTTCAACCACGGCGCCCGGATGC
TGCGCCGCGGCTACAACTTCGTCGACGGCCTGGACGCCGGGCTGTTCTTCATCGCGTTCGTGCGCGACCCGGACACCCAC
TTCATCCCGATCCAGAACAAGATGGCCAAGTCCGACGCGATGATGGAGTACCTCGAGGTCACCGGCTCCGCCCTGTTCGC
CGCACCTCCCGGCGCCGCCCCGGGGGAGTACGTCGGGCAGGCGCTGTTCCACTGA

Upstream 100 bases:

>100_bases
GCCGCAACGTCGCGGCCCCCACTGCTGCTCCCGCCCCGGCGACGGACCCGGCACCCGCCGCGCCCGCCAGCCGCTGACCC
GCGAAGGATCCCGCTCCCCG

Downstream 100 bases:

>100_bases
CTTTCAGCCTGCGGCCTCCTGTGCACCGGGGTCTGCGAGGTCGACCACCCGGTCCACGCCGATGTCCTCGAGGAACGCCC
GGTCGTGGCTGGCGACCACG

Product: putative iron-dependent peroxidase

Products: NA

Alternate protein names: Dye-decolorizing peroxidase; DyP [H]

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MRTPRTKDTGAPLSGGREFSEPDFTMPGSDGPVIPRDSHVRVVHPDFNHGARMLRRGYNFVDGLDAGLFFIAFVRDPDTH
FIPIQNKMAKSDAMMEYLEVTGSALFAAPPGAAPGEYVGQALFH

Sequences:

>Translated_124_residues
MRTPRTKDTGAPLSGGREFSEPDFTMPGSDGPVIPRDSHVRVVHPDFNHGARMLRRGYNFVDGLDAGLFFIAFVRDPDTH
FIPIQNKMAKSDAMMEYLEVTGSALFAAPPGAAPGEYVGQALFH
>Mature_124_residues
MRTPRTKDTGAPLSGGREFSEPDFTMPGSDGPVIPRDSHVRVVHPDFNHGARMLRRGYNFVDGLDAGLFFIAFVRDPDTH
FIPIQNKMAKSDAMMEYLEVTGSALFAAPPGAAPGEYVGQALFH

Specific function: Peroxidase that is able to convert a large number of compounds, but its physiological substrate is not known. Shows high reactivity towards anthraquinone dyes (e.g. Reactive Blue 19) and a modest activity towards standard peroxidase substrates (such as gu

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=128, Percent_Identity=35.15625, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 13565; Mature: 13565

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTPRTKDTGAPLSGGREFSEPDFTMPGSDGPVIPRDSHVRVVHPDFNHGARMLRRGYNF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
VDGLDAGLFFIAFVRDPDTHFIPIQNKMAKSDAMMEYLEVTGSALFAAPPGAAPGEYVGQ
CCCCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHH
ALFH
HHCC
>Mature Secondary Structure
MRTPRTKDTGAPLSGGREFSEPDFTMPGSDGPVIPRDSHVRVVHPDFNHGARMLRRGYNF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHCCCC
VDGLDAGLFFIAFVRDPDTHFIPIQNKMAKSDAMMEYLEVTGSALFAAPPGAAPGEYVGQ
CCCCCCCEEEEEEEECCCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHH
ALFH
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA