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The map label for this gene is yocS [H]

Identifier: 119717527

GI number: 119717527

Start: 3509518

End: 3510468

Strand: Reverse

Name: yocS [H]

Synonym: Noca_3303

Alternate gene names: 119717527

Gene position: 3510468-3509518 (Counterclockwise)

Preceding gene: 119717528

Following gene: 119717525

Centisome position: 70.41

GC content: 69.93

Gene sequence:

>951_bases
GTGAATGACCCGTTGCTGTCCCTGGTCGCGATGGCCGACAACGTCGACGACATCAAGATCGCGTTCGACGAGAGCTCCCG
GATGCTGCTGCGCGTCATCATCGCCTGCATCCTGTTCGGCATCGCGCTCGACACGACCCTCGACGACTTCAGGCGGGCGG
CGCGGCGGCCGAAGGCGATCGCCGTTGGCGTGGGCGCGCAGTTCCTGATCCTGCCGGCCATCACGTTCGTGCTCACCCTG
CTGCTCGGGGTGGGCGGGTCGGTCGCACTCGGCATGATCCTGGTCGCGTGCTGCCCGCCGGGCAACGTCTCCAACATCGT
GACCCACCAGGCCCGCGGCGACGTCGCGCTGTCGGTGTCGATGACGGCGGTCAGCAACCTGCTCGCGATCGTGCTGATGC
CGCTCAACTTCGCGCTCTGGGGCAACCTGCACCCGACCGGCGGCCCGATGATGCGCTCGATCGACCTCGACGTGGTCGAC
ATGCTGATCGAGGTCCTCGTGGTGATCGGCCTCCCGTTCGTGCTCGGCATCACGGCGGCCCACCTGTGGCCCCGGGTCGC
CTCCCGCTCCGGGAAGGTCGTGGGCCCGCTCGCGTTCGCGGCCCTGGGGCTGCTGATCCTGCTGGCGCTCGCGAAGAACT
TCGACCTCTTCCTCACCTGGATCGGCGTGGTCGCGATCGCGGTCCTCCTCCACGACGCGCTCGCGCTCGGCCTCGGCTAC
GCGATCGCCCGGGTGTTCCGGCTGCCCGGCGACGCGACGAAGGCGATGACGTTCGAGGTCGGCGTGCGCAACGCCGGGCT
GGGCCTGCTGCTGGTGTTCAGCTTCTTCGACGGCCTCGGCGGGATGGCGCTGGTCGCCGCCTGGTGGGGGATCTGGGACA
TCATCGCCGCACTGGCCGTCGCGCGCGTGTGGCGTGCTCGAACCCGCACGCCGGTCCCGGCCCGAGGGTGA

Upstream 100 bases:

>100_bases
GTCGCACGGCCCGCCTGGCCTGGGCGGTGAGCAGGCACGCCCCTCGGACCTACACCCGCCTGATGACCCGTCGGCTGCGC
GCCGGGACAGGAGAGAACCC

Downstream 100 bases:

>100_bases
GCGCAGGGCGCGGCTGGGACCGCCCCGGGCCGCCCAACCGTCAGGCGCACAGCCCGTTGGCGAGCCGTTCCTTCGCGTCC
GGGTCGTTCGGGTCGCCGCC

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNDPLLSLVAMADNVDDIKIAFDESSRMLLRVIIACILFGIALDTTLDDFRRAARRPKAIAVGVGAQFLILPAITFVLTL
LLGVGGSVALGMILVACCPPGNVSNIVTHQARGDVALSVSMTAVSNLLAIVLMPLNFALWGNLHPTGGPMMRSIDLDVVD
MLIEVLVVIGLPFVLGITAAHLWPRVASRSGKVVGPLAFAALGLLILLALAKNFDLFLTWIGVVAIAVLLHDALALGLGY
AIARVFRLPGDATKAMTFEVGVRNAGLGLLLVFSFFDGLGGMALVAAWWGIWDIIAALAVARVWRARTRTPVPARG

Sequences:

>Translated_316_residues
MNDPLLSLVAMADNVDDIKIAFDESSRMLLRVIIACILFGIALDTTLDDFRRAARRPKAIAVGVGAQFLILPAITFVLTL
LLGVGGSVALGMILVACCPPGNVSNIVTHQARGDVALSVSMTAVSNLLAIVLMPLNFALWGNLHPTGGPMMRSIDLDVVD
MLIEVLVVIGLPFVLGITAAHLWPRVASRSGKVVGPLAFAALGLLILLALAKNFDLFLTWIGVVAIAVLLHDALALGLGY
AIARVFRLPGDATKAMTFEVGVRNAGLGLLLVFSFFDGLGGMALVAAWWGIWDIIAALAVARVWRARTRTPVPARG
>Mature_316_residues
MNDPLLSLVAMADNVDDIKIAFDESSRMLLRVIIACILFGIALDTTLDDFRRAARRPKAIAVGVGAQFLILPAITFVLTL
LLGVGGSVALGMILVACCPPGNVSNIVTHQARGDVALSVSMTAVSNLLAIVLMPLNFALWGNLHPTGGPMMRSIDLDVVD
MLIEVLVVIGLPFVLGITAAHLWPRVASRSGKVVGPLAFAALGLLILLALAKNFDLFLTWIGVVAIAVLLHDALALGLGY
AIARVFRLPGDATKAMTFEVGVRNAGLGLLLVFSFFDGLGGMALVAAWWGIWDIIAALAVARVWRARTRTPVPARG

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=281, Percent_Identity=27.4021352313167, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI58219066, Length=277, Percent_Identity=26.3537906137184, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI37537552, Length=157, Percent_Identity=26.7515923566879, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4506971, Length=251, Percent_Identity=27.0916334661355, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33418; Mature: 33418

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDPLLSLVAMADNVDDIKIAFDESSRMLLRVIIACILFGIALDTTLDDFRRAARRPKAI
CCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AVGVGAQFLILPAITFVLTLLLGVGGSVALGMILVACCPPGNVSNIVTHQARGDVALSVS
EEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEH
MTAVSNLLAIVLMPLNFALWGNLHPTGGPMMRSIDLDVVDMLIEVLVVIGLPFVLGITAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
HLWPRVASRSGKVVGPLAFAALGLLILLALAKNFDLFLTWIGVVAIAVLLHDALALGLGY
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AIARVFRLPGDATKAMTFEVGVRNAGLGLLLVFSFFDGLGGMALVAAWWGIWDIIAALAV
HHHHHHHCCCCCHHEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ARVWRARTRTPVPARG
HHHHHHHCCCCCCCCC
>Mature Secondary Structure
MNDPLLSLVAMADNVDDIKIAFDESSRMLLRVIIACILFGIALDTTLDDFRRAARRPKAI
CCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
AVGVGAQFLILPAITFVLTLLLGVGGSVALGMILVACCPPGNVSNIVTHQARGDVALSVS
EEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEH
MTAVSNLLAIVLMPLNFALWGNLHPTGGPMMRSIDLDVVDMLIEVLVVIGLPFVLGITAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
HLWPRVASRSGKVVGPLAFAALGLLILLALAKNFDLFLTWIGVVAIAVLLHDALALGLGY
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AIARVFRLPGDATKAMTFEVGVRNAGLGLLLVFSFFDGLGGMALVAAWWGIWDIIAALAV
HHHHHHHCCCCCHHEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ARVWRARTRTPVPARG
HHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]