| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is yjjL [C]
Identifier: 119717059
GI number: 119717059
Start: 3003803
End: 3005089
Strand: Reverse
Name: yjjL [C]
Synonym: Noca_2835
Alternate gene names: 119717059
Gene position: 3005089-3003803 (Counterclockwise)
Preceding gene: 119717060
Following gene: 119717055
Centisome position: 60.27
GC content: 72.11
Gene sequence:
>1287_bases GTGACGCCGAGCCTCCGCAGCCCGTACGCGGTCTGGGGGGTCGGCCTCCTCGTCTACCTGGTGGCCGTCTTCCACCGCTC GTCGCTGGCGGTCGCCGGCCTCGCGGCCACCGACCGGTTCGACATCACCGCCGCCCAGCTGGCGACGTTCACGATGCTGC AGCTGCTGGTGTACGCCGGCCTCCAGATCCCGGTCGGCCTGCTCGTGGACCGGTTCGGGCCGCGCAGCGTGCTGCTGACC GGAACCCTGCTGCTCACCGGGGCGCAGGTCGGCTTCGCGCTGGCCTCGACCTACAGCCTGGCGCTGCTGGCCCGGGTCTT CGTCGGGATGGGCGACGCGATGACCTTCATCTGCGTGCTCCGACTGGTGAGCACCTGGTTCCCGGGCCGGCGGATCCCGC TGATCACCCAGCTGACCGGCACCTTCGGCCAGCTCGGCGCGATCGCGGCCGCGGTGCCGATGACCTGGGCGCTGCGGGAC CTGGGGTGGACGACCGCCTACCTGATCGCCGCGTCACTCGGCGTCCTCCTCACCGTCGCGCTGCTGGCTGTGGTGCGCGA CGCCCCACACCTGACCCACCTGCGCGGTCCGACGATGTCCCTGGCCGCCGTCCGCGCCAGCCTGACCGCCTCCTGGGCCC ATCCCGGCACCCGGCTCGGCTTCTGGATGCACTTCGTGACGCCGTTCAGCGCGACGGCGCTCAGCCTGCTGTGGGGCTAC CCGTTCTTCGTGCTCGGGGAGGGGCGGAGCCCCACGACGGCAGGCGTGCTCCTGACGATCATGGTGGTGGCGGTCATGTG CGCCGGCCCGGTCCTGGGCTGGCTCGTCGGTGCCCATCCGTGGCAGCGCTCGACGATGGTGCTGACGATCGTGGGCTCGG TCGTCGCGGTCTGGACGGTGGTGCTGGCCTGGCCGGGGGACGCGCCACTGTGGTTGCTGGTCCTGCTGGTCGTCGTGGTC GGCGTCGGTGGCCCGGCCTCGATGATCGGCTTCGACCTCGGGCGCACGTCGAACCCCGACGAGCGCTTCGCCAGCGCGAG CGGGATCATCAACCAGGGCGGCTTCCTGGCCAGCCTGCTGCTGGTGATCGCGATCGGCGTCATCCTCGACTGGCGCACCC CGGGGACGAGCTCGGCGTACGGCCCGTCCGCGTTCCGCTGGGCGATGAGCGCCCAGTACGTGCTGTGGGCCGTGGGGCTC ACCCAGGTCTACCGCTACCGGGTCCGGGCCCGTCGCGTGGTCGACCGCGACGAGCTCGAGGGCGTGAACAAGACTCCGGC CGGCTGA
Upstream 100 bases:
>100_bases CGCTGTCGCTGCTCGACCACCGGGCGCCGCACCCGTCGCCGGCCAGGGACGGCCGGCACGGATTCGAGCGCCAGGGCCGG CCGGACCTAGGATTCTGGGA
Downstream 100 bases:
>100_bases GCGGACCGGTCAGTCCGACCGCCGGAGGCACGTGAGGTGCCAGTGGTTGCGGCCCTCCACCCGGTCGTAGGAGAGGTTGT CGACCGCGGCCATCGCCAGG
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; Transmembrane Transporter; Sugar Phosphate Permease; Facilitator Family Transporter; Nitrate/Nitrite Transporter; MFS Transporter; Permease; Facilitator Family Oxalate/Formate Antiporter; Facilitator Membrane Proteins; Facilitator Family Hexuronate Transporter; Permease Of Facilitator Superfamily; Transporter Facilitator Family Protein; Facilitator Superfamily Protein Permease; MFS Family Transporter; Transporter MFS Superfamily; Facilitator Family Protein; Facilitator Superfamily Transporter Transporter; MFS Superfamily Transporter
Number of amino acids: Translated: 428; Mature: 427
Protein sequence:
>428_residues MTPSLRSPYAVWGVGLLVYLVAVFHRSSLAVAGLAATDRFDITAAQLATFTMLQLLVYAGLQIPVGLLVDRFGPRSVLLT GTLLLTGAQVGFALASTYSLALLARVFVGMGDAMTFICVLRLVSTWFPGRRIPLITQLTGTFGQLGAIAAAVPMTWALRD LGWTTAYLIAASLGVLLTVALLAVVRDAPHLTHLRGPTMSLAAVRASLTASWAHPGTRLGFWMHFVTPFSATALSLLWGY PFFVLGEGRSPTTAGVLLTIMVVAVMCAGPVLGWLVGAHPWQRSTMVLTIVGSVVAVWTVVLAWPGDAPLWLLVLLVVVV GVGGPASMIGFDLGRTSNPDERFASASGIINQGGFLASLLLVIAIGVILDWRTPGTSSAYGPSAFRWAMSAQYVLWAVGL TQVYRYRVRARRVVDRDELEGVNKTPAG
Sequences:
>Translated_428_residues MTPSLRSPYAVWGVGLLVYLVAVFHRSSLAVAGLAATDRFDITAAQLATFTMLQLLVYAGLQIPVGLLVDRFGPRSVLLT GTLLLTGAQVGFALASTYSLALLARVFVGMGDAMTFICVLRLVSTWFPGRRIPLITQLTGTFGQLGAIAAAVPMTWALRD LGWTTAYLIAASLGVLLTVALLAVVRDAPHLTHLRGPTMSLAAVRASLTASWAHPGTRLGFWMHFVTPFSATALSLLWGY PFFVLGEGRSPTTAGVLLTIMVVAVMCAGPVLGWLVGAHPWQRSTMVLTIVGSVVAVWTVVLAWPGDAPLWLLVLLVVVV GVGGPASMIGFDLGRTSNPDERFASASGIINQGGFLASLLLVIAIGVILDWRTPGTSSAYGPSAFRWAMSAQYVLWAVGL TQVYRYRVRARRVVDRDELEGVNKTPAG >Mature_427_residues TPSLRSPYAVWGVGLLVYLVAVFHRSSLAVAGLAATDRFDITAAQLATFTMLQLLVYAGLQIPVGLLVDRFGPRSVLLTG TLLLTGAQVGFALASTYSLALLARVFVGMGDAMTFICVLRLVSTWFPGRRIPLITQLTGTFGQLGAIAAAVPMTWALRDL GWTTAYLIAASLGVLLTVALLAVVRDAPHLTHLRGPTMSLAAVRASLTASWAHPGTRLGFWMHFVTPFSATALSLLWGYP FFVLGEGRSPTTAGVLLTIMVVAVMCAGPVLGWLVGAHPWQRSTMVLTIVGSVVAVWTVVLAWPGDAPLWLLVLLVVVVG VGGPASMIGFDLGRTSNPDERFASASGIINQGGFLASLLLVIAIGVILDWRTPGTSSAYGPSAFRWAMSAQYVLWAVGLT QVYRYRVRARRVVDRDELEGVNKTPAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI2367379, Length=183, Percent_Identity=26.775956284153, Blast_Score=62, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45561; Mature: 45430
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPSLRSPYAVWGVGLLVYLVAVFHRSSLAVAGLAATDRFDITAAQLATFTMLQLLVYAG CCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCC LQIPVGLLVDRFGPRSVLLTGTLLLTGAQVGFALASTYSLALLARVFVGMGDAMTFICVL CCCCHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH RLVSTWFPGRRIPLITQLTGTFGQLGAIAAAVPMTWALRDLGWTTAYLIAASLGVLLTVA HHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH LLAVVRDAPHLTHLRGPTMSLAAVRASLTASWAHPGTRLGFWMHFVTPFSATALSLLWGY HHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC PFFVLGEGRSPTTAGVLLTIMVVAVMCAGPVLGWLVGAHPWQRSTMVLTIVGSVVAVWTV CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VLAWPGDAPLWLLVLLVVVVGVGGPASMIGFDLGRTSNPDERFASASGIINQGGFLASLL HHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHH LVIAIGVILDWRTPGTSSAYGPSAFRWAMSAQYVLWAVGLTQVYRYRVRARRVVDRDELE HHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC GVNKTPAG CCCCCCCC >Mature Secondary Structure TPSLRSPYAVWGVGLLVYLVAVFHRSSLAVAGLAATDRFDITAAQLATFTMLQLLVYAG CCCCCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHCC LQIPVGLLVDRFGPRSVLLTGTLLLTGAQVGFALASTYSLALLARVFVGMGDAMTFICVL CCCCHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH RLVSTWFPGRRIPLITQLTGTFGQLGAIAAAVPMTWALRDLGWTTAYLIAASLGVLLTVA HHHHHCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH LLAVVRDAPHLTHLRGPTMSLAAVRASLTASWAHPGTRLGFWMHFVTPFSATALSLLWGY HHHHHHCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC PFFVLGEGRSPTTAGVLLTIMVVAVMCAGPVLGWLVGAHPWQRSTMVLTIVGSVVAVWTV CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VLAWPGDAPLWLLVLLVVVVGVGGPASMIGFDLGRTSNPDERFASASGIINQGGFLASLL HHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHH LVIAIGVILDWRTPGTSSAYGPSAFRWAMSAQYVLWAVGLTQVYRYRVRARRVVDRDELE HHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC GVNKTPAG CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA