| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717047
Identifier: 119717047
GI number: 119717047
Start: 2992832
End: 2993917
Strand: Reverse
Name: 119717047
Synonym: Noca_2823
Alternate gene names: NA
Gene position: 2993917-2992832 (Counterclockwise)
Preceding gene: 119717048
Following gene: 119717046
Centisome position: 60.05
GC content: 69.15
Gene sequence:
>1086_bases ATGTCGCGCAACTCGACCACGATCGCCGCCGGCATCAAGCTCGGGATCTTCACCGTGGTCTCGATCCTGGTGACCGGCCT GCTCGCGGCCATCATGGGCAACGTCGGCTTCGGCGCGGGGACGACGTACCAGGCGGTCTTCAGCACCGCCTCGATGCTCG TGAAGGGCGACGACGTCCGGGTCGCCGGCGTCAGCGTCGGCGAGGTCAAGAAGGTCGAGCACTACGACCGCAGCCAGGCC CTGGTGACGTTCCGGGTGCAGTCCGACGTCCCGCTCACGACGGCCTCCCGCGCCGAGATCCGGTTCCTCAACCTGGTCGG CGACCGCTACCTCGCGCTCGAAGAGGGCGCCGACACCGAGGCCCGGCCGCTGGAGTCCGGGGACACGATCCCGATCGACC GGACCAGGCCCGGGCTGGACCTGACCACGCTCTTCAACGGCTTCCAGCCGCTGTTCCAGGCCCTCAACCCCCAGCAGGTC AACGACCTGAGCATGAACCTGGTGCAGGTCCTCCAGGGTGAGGGCGGCACCGTCCAGGGGCTGCTGCAGAAGACCGCGTC GCTGACCAACACCCTGGCCGACCGCGACCGACTGATCGGCCAGGTCGTCGACAACCTCGGCCAGACCCTGGCCACCGTGG ACGACCGGCACCAGCAGCTCAGCGACCTGGTGGTCGGCCTGAAGGACTGGATGGCCGACCTGGCCCGTGACCGCGGCACG ATCGGCTCGTCGCTGCAGAACATCTCCGACCTCACGGTCGTGGTCGCCGACCTCCTGCGGCAGGGCCGCCCCCTGGTGAA GTCCGACGTCGCGAAGCTGCGCCGCCTGGCCGCGCTGCTCAACGAGAAGAAGAACAGCGACCAGCTCACCGAGCTGCTCG ACCGGCTGCCCGAGTCGATGACCGACCAGACCCGGACCGGCACCTACGGCTCCTGGTACAGCTACTACATCTGCGGGTTC AGCGGCCGGATCACGCTGCCGGCGGGCCTGGGCGAGCTGCCCGGGGTGCGCCAGCTGATGGCCCAGCTGAACAACCTCGA CTTCCACTCCACGGCGCCACGGTGCAACGGGGCGACGGCTCCATGA
Upstream 100 bases:
>100_bases TGATCGCCCAGCTCACCGGCCGGCCAGCGGACAGCTACGGCTCCCTGGGCTCGCTGCTCTACGGCCCGGTCGTGAGCTCC CCCGCTGGAGGTGGGAGGTG
Downstream 100 bases:
>100_bases CCCGATACAGCGACGCGCGGGTCCTCCGGATGGGGGCGATCACGGTGGTGGTGATGCTCCTGGTGCTGGCGGCCGCCTTC AACCTGTCCCAGTTCCCCGG
Product: virulence factor Mce family protein
Products: NA
Alternate protein names: Mce Family Protein; Secreted Protein; MCE Family Protein; MCE-Family B; Mammalian Cell Entry Related Domain Protein; MCE-Family Protein; Mce Family B; Virulence Factor MCE-Like Protein; Mce-Related Protein; Mce Family C; Mce Family Protein Mce5B; MCE-Family C; Mammalian Cell Entry-Like Domain-Containing Protein; Mce Family Lipob; MCE-Family
Number of amino acids: Translated: 361; Mature: 360
Protein sequence:
>361_residues MSRNSTTIAAGIKLGIFTVVSILVTGLLAAIMGNVGFGAGTTYQAVFSTASMLVKGDDVRVAGVSVGEVKKVEHYDRSQA LVTFRVQSDVPLTTASRAEIRFLNLVGDRYLALEEGADTEARPLESGDTIPIDRTRPGLDLTTLFNGFQPLFQALNPQQV NDLSMNLVQVLQGEGGTVQGLLQKTASLTNTLADRDRLIGQVVDNLGQTLATVDDRHQQLSDLVVGLKDWMADLARDRGT IGSSLQNISDLTVVVADLLRQGRPLVKSDVAKLRRLAALLNEKKNSDQLTELLDRLPESMTDQTRTGTYGSWYSYYICGF SGRITLPAGLGELPGVRQLMAQLNNLDFHSTAPRCNGATAP
Sequences:
>Translated_361_residues MSRNSTTIAAGIKLGIFTVVSILVTGLLAAIMGNVGFGAGTTYQAVFSTASMLVKGDDVRVAGVSVGEVKKVEHYDRSQA LVTFRVQSDVPLTTASRAEIRFLNLVGDRYLALEEGADTEARPLESGDTIPIDRTRPGLDLTTLFNGFQPLFQALNPQQV NDLSMNLVQVLQGEGGTVQGLLQKTASLTNTLADRDRLIGQVVDNLGQTLATVDDRHQQLSDLVVGLKDWMADLARDRGT IGSSLQNISDLTVVVADLLRQGRPLVKSDVAKLRRLAALLNEKKNSDQLTELLDRLPESMTDQTRTGTYGSWYSYYICGF SGRITLPAGLGELPGVRQLMAQLNNLDFHSTAPRCNGATAP >Mature_360_residues SRNSTTIAAGIKLGIFTVVSILVTGLLAAIMGNVGFGAGTTYQAVFSTASMLVKGDDVRVAGVSVGEVKKVEHYDRSQAL VTFRVQSDVPLTTASRAEIRFLNLVGDRYLALEEGADTEARPLESGDTIPIDRTRPGLDLTTLFNGFQPLFQALNPQQVN DLSMNLVQVLQGEGGTVQGLLQKTASLTNTLADRDRLIGQVVDNLGQTLATVDDRHQQLSDLVVGLKDWMADLARDRGTI GSSLQNISDLTVVVADLLRQGRPLVKSDVAKLRRLAALLNEKKNSDQLTELLDRLPESMTDQTRTGTYGSWYSYYICGFS GRITLPAGLGELPGVRQLMAQLNNLDFHSTAPRCNGATAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38964; Mature: 38833
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRNSTTIAAGIKLGIFTVVSILVTGLLAAIMGNVGFGAGTTYQAVFSTASMLVKGDDVR CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEECCCEE VAGVSVGEVKKVEHYDRSQALVTFRVQSDVPLTTASRAEIRFLNLVGDRYLALEEGADTE EECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHEEEHHHHCCCEEEEECCCCCC ARPLESGDTIPIDRTRPGLDLTTLFNGFQPLFQALNPQQVNDLSMNLVQVLQGEGGTVQG CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHH LLQKTASLTNTLADRDRLIGQVVDNLGQTLATVDDRHQQLSDLVVGLKDWMADLARDRGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH IGSSLQNISDLTVVVADLLRQGRPLVKSDVAKLRRLAALLNEKKNSDQLTELLDRLPESM HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TDQTRTGTYGSWYSYYICGFSGRITLPAGLGELPGVRQLMAQLNNLDFHSTAPRCNGATA HCCCCCCCCCCHHEEEEECCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC P C >Mature Secondary Structure SRNSTTIAAGIKLGIFTVVSILVTGLLAAIMGNVGFGAGTTYQAVFSTASMLVKGDDVR CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEECCCEE VAGVSVGEVKKVEHYDRSQALVTFRVQSDVPLTTASRAEIRFLNLVGDRYLALEEGADTE EECCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHEEEHHHHCCCEEEEECCCCCC ARPLESGDTIPIDRTRPGLDLTTLFNGFQPLFQALNPQQVNDLSMNLVQVLQGEGGTVQG CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHH LLQKTASLTNTLADRDRLIGQVVDNLGQTLATVDDRHQQLSDLVVGLKDWMADLARDRGT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH IGSSLQNISDLTVVVADLLRQGRPLVKSDVAKLRRLAALLNEKKNSDQLTELLDRLPESM HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH TDQTRTGTYGSWYSYYICGFSGRITLPAGLGELPGVRQLMAQLNNLDFHSTAPRCNGATA HCCCCCCCCCCHHEEEEECCCCCEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC P C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA