| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119717045
Identifier: 119717045
GI number: 119717045
Start: 2990635
End: 2991849
Strand: Reverse
Name: 119717045
Synonym: Noca_2821
Alternate gene names: NA
Gene position: 2991849-2990635 (Counterclockwise)
Preceding gene: 119717046
Following gene: 119717044
Centisome position: 60.01
GC content: 71.77
Gene sequence:
>1215_bases GTGATCACCGGGTTGTGGAGCCGGGTCAACGGCCGCGCGCTCGCGGTCGCGGCCGCTGTCGTGCTGCTGGCGGCGACGTA CTTCATCGTGCTGCGCGACGACACCGCGACCAAGACCGTGAGCGCCCACTTCCCGCGGGCGGTCAGCATCTACGAGGGCA GCGACGTGCGGATCCTCGGCGTGAACGTCGGCCGGGTGACCGCGGTGACGCCGGAGGGCAACTCCGTGCGCGTGGACATG GAGTACGACGCGGAGTACCAGGTGCCGGCCGACGCCCAGGCCGTGATCGTGACTCCGACCCTGGTCGCGGACCGGTTCGT CCAGCTCACGCCGGCCTACGCCGAGGGCGACCGGGTGCTGGCCGACGGCGCGGACATCGCGCTGCCCGACACCGGTGTCC CGGTCGAGCTGGACCGGATCTACGCGAGCCTGCGCGACCTCTCCGAGGCCCTCGGCCCCAACGGCGTCAACAAGGACGGC ACCCTCGACCATCTGCTCGAGGCCGGGGCGCACGCGTTGGACGGCAGGGGCGCGCTCGGCAACCGGATGCTCACCCGGCT CGCCGCGGCCGCGCGGACGTTCGGCGAGGGAGCGGGTCCGCTGTTCGACACCGTCAGCCGGCTCGCCGAGTTCACCACCA CGCTCGCGGAGAACGGCAAGTTCGTCCGGGCGTTCATCAAGGACCTCGCCGGCGTCTCGTCCCAGCTCGCGGACGAGCGA ACCGAGATCCAGGGAGCGCTCGCGGCGGTCGCGGACGCGGTCGGGACCGTGAAGTCGTTCGTGCACGACAACCGTGCGGC GCTGGTCGCGGACGTCGAGCGACTCACCCGGGTGATGAAGACCATCGCCTCCGAGAAGGACAGCATCGACACCGCGCTGC GCGTCGCGCCCGTAGCCATCGGCAACCTCAGCCTGGCCTACAACAGCAGGTCCGGGACGATCGGCTCCCGCATCGGCATC AGCGGCAACGTGTGGGACGCCGACGGCTTCCTGTGCGCCGTGGTCCAGCAGTCCAGCCTCTCGCGGGCCAGCAAGGACCT GGCGTGCACGCTGTTCAAGCAGCTTCTCGAGCCGGTCGAGGGCCAGGTGCCGACCATCCCGCCCGGGCCCGACGGCCGGT CGTCGACGGGCGATCAGGTGCCGCGCCAGGTGCAGCGTCAGTACGCCGGAGCCGGCGGCGGGTCGCTCGGCCAGCTGATG GGGGGCGGCTCGTGA
Upstream 100 bases:
>100_bases TCGGCAACATCATCGGGACCGGTCCCTGGTTCGACGCCTACGCGTCGAACCTCGCCGCGATCCCGACCGGAGAGTTCGTG CCCGGACCCCTGGAGGGCCA
Downstream 100 bases:
>100_bases TCCGCCTGCTGCGCAGCGGGGTGCTCCTCGTGGTGCTCGCCCTCCTCGCGGGTGCGTGCAAGTTCGACGGCGCCTACGAC CTGCCGCTGCCGGGCTCGCC
Product: virulence factor Mce family protein
Products: NA
Alternate protein names: Mce Family Protein; MCE-Family D; Secreted Protein; MCE Family Protein; Mce Family D; MCE-Family Protein; Virulence Factor MCE-Like Protein; Mammalian Cell Entry Related Domain Protein; Mce-Related Protein; MCE-Family
Number of amino acids: Translated: 404; Mature: 404
Protein sequence:
>404_residues MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILGVNVGRVTAVTPEGNSVRVDM EYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVLADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDG TLDHLLEAGAHALDGRGALGNRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAIGNLSLAYNSRSGTIGSRIGI SGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVEGQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLM GGGS
Sequences:
>Translated_404_residues MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILGVNVGRVTAVTPEGNSVRVDM EYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVLADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDG TLDHLLEAGAHALDGRGALGNRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAIGNLSLAYNSRSGTIGSRIGI SGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVEGQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLM GGGS >Mature_404_residues MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILGVNVGRVTAVTPEGNSVRVDM EYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVLADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDG TLDHLLEAGAHALDGRGALGNRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAIGNLSLAYNSRSGTIGSRIGI SGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVEGQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLM GGGS
Specific function: Unknown
COG id: COG1463
COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42202; Mature: 42202
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILG CCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCCEEEEEECCCEEEEE VNVGRVTAVTPEGNSVRVDMEYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVL EECCEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE ADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDGTLDHLLEAGAHALDGRGALG ECCCCEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCHH NRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAI HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEE GNLSLAYNSRSGTIGSRIGISGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVE CCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC GQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLMGGGS CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC >Mature Secondary Structure MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILG CCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCCEEEEEECCCEEEEE VNVGRVTAVTPEGNSVRVDMEYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVL EECCEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE ADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDGTLDHLLEAGAHALDGRGALG ECCCCEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCHH NRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAI HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEE GNLSLAYNSRSGTIGSRIGISGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVE CCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC GQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLMGGGS CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA