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The map label for this gene is yrbD [C]

Identifier: 119717044

GI number: 119717044

Start: 2989328

End: 2990638

Strand: Reverse

Name: yrbD [C]

Synonym: Noca_2820

Alternate gene names: 119717044

Gene position: 2990638-2989328 (Counterclockwise)

Preceding gene: 119717045

Following gene: 119717043

Centisome position: 59.98

GC content: 70.25

Gene sequence:

>1311_bases
GTGATCCGCCTGCTGCGCAGCGGGGTGCTCCTCGTGGTGCTCGCCCTCCTCGCGGGTGCGTGCAAGTTCGACGGCGCCTA
CGACCTGCCGCTGCCGGGCTCGCCGGTCGACGCGGACCACTCCTACGAGGTGACCGCCGAGTTCGCCGACATCCTCAACG
TGGTGCCGCGCTCGCCGGTGATGGTCGACGACGTCACGGTCGGCGAGGTCACCGACGTCGAGCGGGTGGGCTGGCACGCC
CGCATCACGCTGCGGATCCGTGACGACGTGAAGCTGCCGGACAACGCGGTCGCCGACATCCGGCAGGTCAGCCTGCTGGG
GGAGAAGTACGTCGCCCTGGAGGCGCCCGCCGGCACGGCCGCGGAGGGCACCCTGTCCGACGGCGACAACATCCCGCTGG
CCGACACCGGGCGCAACCCGGAGGTCGAGGAGGTGCTCGGTGCGCTCTCCTTCCTGCTCAGCGGCGGTGGCGTGAGCCAG
CTGGGCACCATCACCCACGAGCTCAACCAGGTCATGGACGGGCGCACCGAGCGGCTGCGTCACCTGCTCGGCTCCCTCGA
GAGCGTCGTGGCGGCGCTGGACGACCAGAAGGCCGACATCGTGACCGCGATGGAGTCGCTCGACCACCTCACCTCGACCC
TCAACGCCGAGAAGAAGACGGTCACCGACGCCCTCGACGTCGCCGGCCCCGCAGTCGAGGTGCTCGCCGCCCAACACGAC
GAGCTGATCGCGATGCTGCGCTCGCTCGACCGACTCGGCGCCGTCGGCACCCGGGTGATCGGTCAGAGCAAGGCCGACAT
CCTGGCCTCGCTCGACCACCTCCAGCCGATCCTCCAACGCCTCCACGACGCCGGTGACGACCTCGCCCCCGGGCTGAACC
TCCTGGTGAGCTTCCCGTTCCCCAAGGAGGCCTCGGAGATCGTCAAGGGCGACTACGCCAACACCTCGATCCGCGCCGAC
ATCAGCCTCGAGAACCTGCTGCCCGGCCAGTCCGGCGGCGGCATCCCCGGCATCCCCGACCCGAGCCAGCTGCTGAGCAC
CGTCGAGAAGTGCCTGCGCAGCGGCGACCTCACCAGCCGGTCCTGCCAGCAGGTGCTCGACTCCGCGAACCTGCTGAAGA
AGCTGGTCGAGGACTGCAAGAAGAAGAAGTACGACGGCAACCCGGTCTGCACGATCATCGAGGCGCTGCCCGAGCTGCCG
GACCTCTCGGGGCTGGCGGGACTGACCGGCGGCGTCCTCGGCGAGGCGCTAAGTAGCGGTGAGCCAAGCCGGGCGCCGAG
CCCCGCTGGCCTCTACGGGGGTGCACCATGA

Upstream 100 bases:

>100_bases
ACGGCCGGTCGTCGACGGGCGATCAGGTGCCGCGCCAGGTGCAGCGTCAGTACGCCGGAGCCGGCGGCGGGTCGCTCGGC
CAGCTGATGGGGGGCGGCTC

Downstream 100 bases:

>100_bases
GCACGGGGGTGAAGGTCCGGATCGCGGCGTTCCTGGTGCTCAGCGCCGTCGGCGTCGTCTACGTCGCCGGCTCCTACCTT
GGGTTCGTCGACCGGATCCT

Product: virulence factor Mce family protein

Products: NA

Alternate protein names: Mce Family Protein; Secreted Protein; MCE Family Protein; Mce Family Lipoe; MCE Family Lipoprotein LprM; Mce Related Protein; MCE Family Lipoprotein LprN; MCE Family LipoE; Mce Family Protein Mce5E; MCE-Family Lipoprotein LprL; MCE Family Lipoprotein; MCE Family Lipoprotein LprK; Mce-Related Protein; MCE-Family Protein LprN; MCE-Family LipoE; Fis Family Transcriptional Regulator; Lipoprotein

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MIRLLRSGVLLVVLALLAGACKFDGAYDLPLPGSPVDADHSYEVTAEFADILNVVPRSPVMVDDVTVGEVTDVERVGWHA
RITLRIRDDVKLPDNAVADIRQVSLLGEKYVALEAPAGTAAEGTLSDGDNIPLADTGRNPEVEEVLGALSFLLSGGGVSQ
LGTITHELNQVMDGRTERLRHLLGSLESVVAALDDQKADIVTAMESLDHLTSTLNAEKKTVTDALDVAGPAVEVLAAQHD
ELIAMLRSLDRLGAVGTRVIGQSKADILASLDHLQPILQRLHDAGDDLAPGLNLLVSFPFPKEASEIVKGDYANTSIRAD
ISLENLLPGQSGGGIPGIPDPSQLLSTVEKCLRSGDLTSRSCQQVLDSANLLKKLVEDCKKKKYDGNPVCTIIEALPELP
DLSGLAGLTGGVLGEALSSGEPSRAPSPAGLYGGAP

Sequences:

>Translated_436_residues
MIRLLRSGVLLVVLALLAGACKFDGAYDLPLPGSPVDADHSYEVTAEFADILNVVPRSPVMVDDVTVGEVTDVERVGWHA
RITLRIRDDVKLPDNAVADIRQVSLLGEKYVALEAPAGTAAEGTLSDGDNIPLADTGRNPEVEEVLGALSFLLSGGGVSQ
LGTITHELNQVMDGRTERLRHLLGSLESVVAALDDQKADIVTAMESLDHLTSTLNAEKKTVTDALDVAGPAVEVLAAQHD
ELIAMLRSLDRLGAVGTRVIGQSKADILASLDHLQPILQRLHDAGDDLAPGLNLLVSFPFPKEASEIVKGDYANTSIRAD
ISLENLLPGQSGGGIPGIPDPSQLLSTVEKCLRSGDLTSRSCQQVLDSANLLKKLVEDCKKKKYDGNPVCTIIEALPELP
DLSGLAGLTGGVLGEALSSGEPSRAPSPAGLYGGAP
>Mature_436_residues
MIRLLRSGVLLVVLALLAGACKFDGAYDLPLPGSPVDADHSYEVTAEFADILNVVPRSPVMVDDVTVGEVTDVERVGWHA
RITLRIRDDVKLPDNAVADIRQVSLLGEKYVALEAPAGTAAEGTLSDGDNIPLADTGRNPEVEEVLGALSFLLSGGGVSQ
LGTITHELNQVMDGRTERLRHLLGSLESVVAALDDQKADIVTAMESLDHLTSTLNAEKKTVTDALDVAGPAVEVLAAQHD
ELIAMLRSLDRLGAVGTRVIGQSKADILASLDHLQPILQRLHDAGDDLAPGLNLLVSFPFPKEASEIVKGDYANTSIRAD
ISLENLLPGQSGGGIPGIPDPSQLLSTVEKCLRSGDLTSRSCQQVLDSANLLKKLVEDCKKKKYDGNPVCTIIEALPELP
DLSGLAGLTGGVLGEALSSGEPSRAPSPAGLYGGAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45777; Mature: 45777

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLLRSGVLLVVLALLAGACKFDGAYDLPLPGSPVDADHSYEVTAEFADILNVVPRSPV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
MVDDVTVGEVTDVERVGWHARITLRIRDDVKLPDNAVADIRQVSLLGEKYVALEAPAGTA
EECCCCCCCCCCHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
AEGTLSDGDNIPLADTGRNPEVEEVLGALSFLLSGGGVSQLGTITHELNQVMDGRTERLR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
HLLGSLESVVAALDDQKADIVTAMESLDHLTSTLNAEKKTVTDALDVAGPAVEVLAAQHD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH
ELIAMLRSLDRLGAVGTRVIGQSKADILASLDHLQPILQRLHDAGDDLAPGLNLLVSFPF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
PKEASEIVKGDYANTSIRADISLENLLPGQSGGGIPGIPDPSQLLSTVEKCLRSGDLTSR
CHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH
SCQQVLDSANLLKKLVEDCKKKKYDGNPVCTIIEALPELPDLSGLAGLTGGVLGEALSSG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
EPSRAPSPAGLYGGAP
CCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRLLRSGVLLVVLALLAGACKFDGAYDLPLPGSPVDADHSYEVTAEFADILNVVPRSPV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE
MVDDVTVGEVTDVERVGWHARITLRIRDDVKLPDNAVADIRQVSLLGEKYVALEAPAGTA
EECCCCCCCCCCHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
AEGTLSDGDNIPLADTGRNPEVEEVLGALSFLLSGGGVSQLGTITHELNQVMDGRTERLR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHH
HLLGSLESVVAALDDQKADIVTAMESLDHLTSTLNAEKKTVTDALDVAGPAVEVLAAQHD
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHH
ELIAMLRSLDRLGAVGTRVIGQSKADILASLDHLQPILQRLHDAGDDLAPGLNLLVSFPF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
PKEASEIVKGDYANTSIRADISLENLLPGQSGGGIPGIPDPSQLLSTVEKCLRSGDLTSR
CHHHHHHHCCCCCCCEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHH
SCQQVLDSANLLKKLVEDCKKKKYDGNPVCTIIEALPELPDLSGLAGLTGGVLGEALSSG
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
EPSRAPSPAGLYGGAP
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA