| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is argD [H]
Identifier: 119716697
GI number: 119716697
Start: 2632017
End: 2633252
Strand: Direct
Name: argD [H]
Synonym: Noca_2471
Alternate gene names: 119716697
Gene position: 2632017-2633252 (Clockwise)
Preceding gene: 119716696
Following gene: 119716698
Centisome position: 52.79
GC content: 73.46
Gene sequence:
>1236_bases ATGACCGATTCCACCGAAGCCGTTTCTGGGGGGTCCAAGGAGGGCGGAGCCCCCCTTGTGGGCGGAGCCCCCCTTGCGGA GCGTTACGCCGCCAGCCTGATGAACACCTTCGGCCCCCCGAAGCTGGTGCTCACCCGCGGTGCGGGCGCGCACGTGTGGG ATGCCGACGGCAACGAGTACGTCGACCTCCTCGGCGGGATCGCCGTCAACGCCCTCGGCCACGGCCACCCGGCGCTGGTC GCGGCCGTCACGACCCAGCTGCAGACCCTCGGGCACATCTCGAACTTCTTCACCAGCGCCCCGCAGGTCGAGCTCGCCGA GCGGCTGCTCGCCCTGCTGGGCGCCGGACCGGGCGGCGGCAAGGTGTTCTTCACCAACTCCGGCACCGAGGCCAACGAGG CCGCGTTCAAGCTGACCCGCCGCACCGGGCGCACCCACGTCGTGGTCGCCGACGGCAGCTTCCACGGCCGCACGATGGGC GCGCTCGCACTCACCTCGAAGGCGGCCTACCGCGCCCCGTTCGAGCCGTTGCCCGGCGAGGTGACGTTCGTGCCGTACGG CGACGCCGATGCCCTCGCGGCGGCCGTGACCGACGCGACGGCGGCGGTGCTGCTCGAGCCGATCCAGGGCGAGGCCGGCG TCGTCGTGCCCCCGGAGGGCTATCTCGCGGCGGCGCGCGCGATCGCCGACGAGCACGGCGCGCTGCTCTGGCTCGACGAG GTGCAGACCGGGCTGGGCAGGACCGGCCGATGGTTCGCGTTCGCGACCTCCGGGATCACTCCCGACGTCGTGACCGTCGC CAAGGGCCTGGGCGGCGGCTTCCCGATCGGCGCCTGCATCGGCGTCGGCGACGCCGGGAACCTGCTCGAGCCGGGCAACC ACGGCACCACCTTCGGCGGCAACCCGGTGGCCTGCGCCGCAGCACTCGCCGTGCTCAGGACCATCGAGGACGAGGACCTC CTCGAGCACGTCACGGTCCTCGGCGAGCAGCTCCGCGACGGGCTGGCCGCCGACCCGCGGGTCTCCGAGGTCAGGGGGGA GGGGTTGCTGATCGGCCTCGACCTGACGACCGACGCCGCTGCCGCGGTCGTCGCCGCCGCCCAGCGGGCGGGCTTCATCG TGAACAACCCGACCCCGAGCCGGATCCGGCTGGCCCCGCCGCTGGTCCTCACCCCGGAGGACGCCGAGTCCTTCCTGCGG GCGTGGCCGGCCATCTTGGACGAGGCGATGGCATGA
Upstream 100 bases:
>100_bases CGCACGCGGTCCTGCTGGAGCTCTTCACCAACGAGGGCGTCGGCACCCAGGTGCTGCCCGGCGTCGAGACCAAGACCCGG AAGGCGAGGGACACCCAGTC
Downstream 100 bases:
>100_bases CCCGGCACTTCCTGGCGGACGACGACCTGAGCCCCGCCGAGCAGGCGCGGGTCCTCGACCTGGCGGCCGAGCTCAAGCAG GCGCCGTACGACGCCAAGCC
Product: acetylornithine aminotransferase
Products: NA
Alternate protein names: ACOAT [H]
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MTDSTEAVSGGSKEGGAPLVGGAPLAERYAASLMNTFGPPKLVLTRGAGAHVWDADGNEYVDLLGGIAVNALGHGHPALV AAVTTQLQTLGHISNFFTSAPQVELAERLLALLGAGPGGGKVFFTNSGTEANEAAFKLTRRTGRTHVVVADGSFHGRTMG ALALTSKAAYRAPFEPLPGEVTFVPYGDADALAAAVTDATAAVLLEPIQGEAGVVVPPEGYLAAARAIADEHGALLWLDE VQTGLGRTGRWFAFATSGITPDVVTVAKGLGGGFPIGACIGVGDAGNLLEPGNHGTTFGGNPVACAAALAVLRTIEDEDL LEHVTVLGEQLRDGLAADPRVSEVRGEGLLIGLDLTTDAAAAVVAAAQRAGFIVNNPTPSRIRLAPPLVLTPEDAESFLR AWPAILDEAMA
Sequences:
>Translated_411_residues MTDSTEAVSGGSKEGGAPLVGGAPLAERYAASLMNTFGPPKLVLTRGAGAHVWDADGNEYVDLLGGIAVNALGHGHPALV AAVTTQLQTLGHISNFFTSAPQVELAERLLALLGAGPGGGKVFFTNSGTEANEAAFKLTRRTGRTHVVVADGSFHGRTMG ALALTSKAAYRAPFEPLPGEVTFVPYGDADALAAAVTDATAAVLLEPIQGEAGVVVPPEGYLAAARAIADEHGALLWLDE VQTGLGRTGRWFAFATSGITPDVVTVAKGLGGGFPIGACIGVGDAGNLLEPGNHGTTFGGNPVACAAALAVLRTIEDEDL LEHVTVLGEQLRDGLAADPRVSEVRGEGLLIGLDLTTDAAAAVVAAAQRAGFIVNNPTPSRIRLAPPLVLTPEDAESFLR AWPAILDEAMA >Mature_410_residues TDSTEAVSGGSKEGGAPLVGGAPLAERYAASLMNTFGPPKLVLTRGAGAHVWDADGNEYVDLLGGIAVNALGHGHPALVA AVTTQLQTLGHISNFFTSAPQVELAERLLALLGAGPGGGKVFFTNSGTEANEAAFKLTRRTGRTHVVVADGSFHGRTMGA LALTSKAAYRAPFEPLPGEVTFVPYGDADALAAAVTDATAAVLLEPIQGEAGVVVPPEGYLAAARAIADEHGALLWLDEV QTGLGRTGRWFAFATSGITPDVVTVAKGLGGGFPIGACIGVGDAGNLLEPGNHGTTFGGNPVACAAALAVLRTIEDEDLL EHVTVLGEQLRDGLAADPRVSEVRGEGLLIGLDLTTDAAAAVVAAAQRAGFIVNNPTPSRIRLAPPLVLTPEDAESFLRA WPAILDEAMA
Specific function: Involved In Both The Arginine And Lysine Biosynthetic Pathways. [C]
COG id: COG4992
COG function: function code E; Ornithine/acetylornithine aminotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557809, Length=386, Percent_Identity=37.0466321243523, Blast_Score=227, Evalue=1e-59, Organism=Homo sapiens, GI284507298, Length=285, Percent_Identity=40.3508771929825, Blast_Score=184, Evalue=1e-46, Organism=Homo sapiens, GI13994255, Length=450, Percent_Identity=30.4444444444444, Blast_Score=182, Evalue=7e-46, Organism=Homo sapiens, GI37574042, Length=422, Percent_Identity=29.6208530805687, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI24119277, Length=431, Percent_Identity=30.6264501160093, Blast_Score=161, Evalue=1e-39, Organism=Homo sapiens, GI226442705, Length=422, Percent_Identity=28.9099526066351, Blast_Score=152, Evalue=5e-37, Organism=Homo sapiens, GI226442709, Length=387, Percent_Identity=30.4909560723514, Blast_Score=149, Evalue=3e-36, Organism=Escherichia coli, GI1789759, Length=378, Percent_Identity=41.2698412698413, Blast_Score=281, Evalue=4e-77, Organism=Escherichia coli, GI1788044, Length=396, Percent_Identity=38.1313131313131, Blast_Score=265, Evalue=4e-72, Organism=Escherichia coli, GI145693181, Length=373, Percent_Identity=41.0187667560322, Blast_Score=244, Evalue=8e-66, Organism=Escherichia coli, GI1789016, Length=397, Percent_Identity=36.272040302267, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI1787560, Length=347, Percent_Identity=39.193083573487, Blast_Score=194, Evalue=9e-51, Organism=Escherichia coli, GI1786349, Length=309, Percent_Identity=31.7152103559871, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1786991, Length=381, Percent_Identity=29.3963254593176, Blast_Score=114, Evalue=1e-26, Organism=Caenorhabditis elegans, GI25144271, Length=378, Percent_Identity=35.4497354497354, Blast_Score=220, Evalue=1e-57, Organism=Caenorhabditis elegans, GI32564660, Length=418, Percent_Identity=31.5789473684211, Blast_Score=196, Evalue=2e-50, Organism=Caenorhabditis elegans, GI71992977, Length=419, Percent_Identity=28.8782816229117, Blast_Score=175, Evalue=4e-44, Organism=Caenorhabditis elegans, GI25144274, Length=257, Percent_Identity=37.7431906614786, Blast_Score=169, Evalue=2e-42, Organism=Caenorhabditis elegans, GI17541228, Length=411, Percent_Identity=26.0340632603406, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71981843, Length=165, Percent_Identity=32.1212121212121, Blast_Score=75, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6324432, Length=394, Percent_Identity=35.5329949238579, Blast_Score=236, Evalue=4e-63, Organism=Saccharomyces cerevisiae, GI6323470, Length=403, Percent_Identity=34.2431761786601, Blast_Score=207, Evalue=2e-54, Organism=Drosophila melanogaster, GI21357415, Length=371, Percent_Identity=34.7708894878706, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI21356575, Length=430, Percent_Identity=30.9302325581395, Blast_Score=171, Evalue=6e-43, Organism=Drosophila melanogaster, GI161085790, Length=423, Percent_Identity=31.4420803782506, Blast_Score=171, Evalue=7e-43, Organism=Drosophila melanogaster, GI28574759, Length=423, Percent_Identity=31.2056737588652, Blast_Score=170, Evalue=1e-42, Organism=Drosophila melanogaster, GI281366494, Length=426, Percent_Identity=26.5258215962441, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI24667139, Length=426, Percent_Identity=26.5258215962441, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI24667143, Length=426, Percent_Identity=26.5258215962441, Blast_Score=101, Evalue=1e-21,
Paralogues:
None
Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004636 - InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.11 [H]
Molecular weight: Translated: 41868; Mature: 41737
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: PS00600 AA_TRANSFER_CLASS_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDSTEAVSGGSKEGGAPLVGGAPLAERYAASLMNTFGPPKLVLTRGAGAHVWDADGNEY CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCHH VDLLGGIAVNALGHGHPALVAAVTTQLQTLGHISNFFTSAPQVELAERLLALLGAGPGGG HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC KVFFTNSGTEANEAAFKLTRRTGRTHVVVADGSFHGRTMGALALTSKAAYRAPFEPLPGE EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCHHHCCCCCCCCCC VTFVPYGDADALAAAVTDATAAVLLEPIQGEAGVVVPPEGYLAAARAIADEHGALLWLDE EEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCHHHHHHHHHCCCCCEEEHHH VQTGLGRTGRWFAFATSGITPDVVTVAKGLGGGFPIGACIGVGDAGNLLEPGNHGTTFGG HHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHEEECCCCCCCCCCCCCCCCCCC NPVACAAALAVLRTIEDEDLLEHVTVLGEQLRDGLAADPRVSEVRGEGLLIGLDLTTDAA CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCHHH AAVVAAAQRAGFIVNNPTPSRIRLAPPLVLTPEDAESFLRAWPAILDEAMA HHHHHHHHHCCEEEECCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TDSTEAVSGGSKEGGAPLVGGAPLAERYAASLMNTFGPPKLVLTRGAGAHVWDADGNEY CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCHH VDLLGGIAVNALGHGHPALVAAVTTQLQTLGHISNFFTSAPQVELAERLLALLGAGPGGG HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC KVFFTNSGTEANEAAFKLTRRTGRTHVVVADGSFHGRTMGALALTSKAAYRAPFEPLPGE EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCHHHCCCCCCCCCC VTFVPYGDADALAAAVTDATAAVLLEPIQGEAGVVVPPEGYLAAARAIADEHGALLWLDE EEEEECCCHHHHHHHHHHHHHHHHEECCCCCCCEEECCCCHHHHHHHHHCCCCCEEEHHH VQTGLGRTGRWFAFATSGITPDVVTVAKGLGGGFPIGACIGVGDAGNLLEPGNHGTTFGG HHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHEEECCCCCCCCCCCCCCCCCCC NPVACAAALAVLRTIEDEDLLEHVTVLGEQLRDGLAADPRVSEVRGEGLLIGLDLTTDAA CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCEEEEEEECCCHHH AAVVAAAQRAGFIVNNPTPSRIRLAPPLVLTPEDAESFLRAWPAILDEAMA HHHHHHHHHCCEEEECCCCCEEEECCCEEECCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA