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The map label for this gene is nusB

Identifier: 119716645

GI number: 119716645

Start: 2577258

End: 2577665

Strand: Direct

Name: nusB

Synonym: Noca_2418

Alternate gene names: 119716645

Gene position: 2577258-2577665 (Clockwise)

Preceding gene: 119716644

Following gene: 119716646

Centisome position: 51.69

GC content: 71.57

Gene sequence:

>408_bases
ATGAGCGCCCGTTCCAAGGCCCGCAAGCGCGCCCTGGACGTCCTCTTCGCCTCCGACGTGCGGGGCGAGGACGCCGTGGC
CGCCCTGGACCGGGCGATCGCGGAGGGCGAGGGGCCGACTAACGACTACACGGCCACGCTGGTCCGGGGCGTCGTCGAGC
ACCAGGCGCGCATCGACGAGCTGCTGTCGTCGTACTCCCACGGGTGGGCGCTGGACCGGATGCCGGCGGTCGACCGCAAC
GTGCTGCGACTGGGCGTGTGGGAGCTGCTGTACGCCGACGACGTCCCCGACGCGGTGGCCGTGAGCGAGGCGATGGCGCT
GGTCACCGACCTCTCCACCGACGAGTCGCCGCAGTTCGTCAACGGCATCCTCGGCAGCATCGTGCGCAACAAGCCGTCCC
TCGCCTGA

Upstream 100 bases:

>100_bases
AGACCGGCCACGAGATCCAGGTCCCGCTGTTCATCAACCAGGGCGAGAAGGTCAAGGTCGACACCCGCGACTCCTCCTAC
CTCGGTCGCGTGAAGGGCTG

Downstream 100 bases:

>100_bases
GCAGCCGCCGACTGCGCCTGGGCCCATAGTGGACCCATGGACGCACACGAGGTGGACCTGGTCGTGATCGGCACCGGCCC
CGGCGGCGAGGCGCTCGCCA

Product: transcription antitermination factor NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTNDYTATLVRGVVEHQARIDELLSSYSHGWALDRMPAVDRN
VLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDESPQFVNGILGSIVRNKPSLA

Sequences:

>Translated_135_residues
MSARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTNDYTATLVRGVVEHQARIDELLSSYSHGWALDRMPAVDRN
VLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDESPQFVNGILGSIVRNKPSLA
>Mature_134_residues
SARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTNDYTATLVRGVVEHQARIDELLSSYSHGWALDRMPAVDRNV
LRLGVWELLYADDVPDAVAVSEAMALVTDLSTDESPQFVNGILGSIVRNKPSLA

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_NOCSJ (A1SJD8)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_923610.1
- ProteinModelPortal:   A1SJD8
- SMR:   A1SJD8
- STRING:   A1SJD8
- GeneID:   4598254
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_2418
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   DDSPSFV
- PhylomeDB:   A1SJD8
- BioCyc:   NSP35761:NOCA_2418-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 14580; Mature: 14448

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTNDYTATLVRGVVEHQARIDE
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LLSSYSHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDESPQFV
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
NGILGSIVRNKPSLA
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
SARSKARKRALDVLFASDVRGEDAVAALDRAIAEGEGPTNDYTATLVRGVVEHQARIDE
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LLSSYSHGWALDRMPAVDRNVLRLGVWELLYADDVPDAVAVSEAMALVTDLSTDESPQFV
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
NGILGSIVRNKPSLA
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA