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The map label for this gene is yqgF [C]

Identifier: 119716635

GI number: 119716635

Start: 2569007

End: 2569477

Strand: Direct

Name: yqgF [C]

Synonym: Noca_2408

Alternate gene names: 119716635

Gene position: 2569007-2569477 (Clockwise)

Preceding gene: 119716634

Following gene: 119716636

Centisome position: 51.53

GC content: 75.58

Gene sequence:

>471_bases
ATGAGGGCCGGCGTGCGGATCGGCATCGACCCCGGCGACGCCCGCATCGGGGTTGCCCGCAGCGACCCGTCGGGGTTCCT
CGCCACCCCGGTGGAGACGGTGCGTCGGGGGAAGGGCGACCTCGCGAGGATCGGCCGGATCCTTGCCGCCGAGGAGGACG
AGGGCGCCACCGTCCTGGAGGTGGTCGTCGGGCTGCCACGCTCGCTGTCCGGCCGCGAGGGCCCGGCGGCGGCCAAGGTC
CGGGAGTTCGCCGGCCGGCTGGCGGCGCGGGTCGCGCCGGTGCCGGTGCGCCTGGTCGACGAGCGCATGACCACGGTGTC
CGCTGAGGCTATGCTGCGCGACCAGGGCCGCACGGGGGGCAAGCGGCGAGCCGTCGTCGACCAGGCAGCAGCCGTCCTGA
TCCTGCAGCACGCACTGGACACCGAACGCGCGACGGGGGCCGCGCCGGGCGAGATCGTCGAGGAGACGTAG

Upstream 100 bases:

>100_bases
GCGGCACCGACGCCTCGCGCATCGACGAGGCGATCACGCTGGTGACCGCCGAGGTCGGGCGGGTGGCCGCCGGCTGACGC
CGGTCCGGGATGGTGAGGCG

Downstream 100 bases:

>100_bases
ATGACCGACGAGCACGACGCCGAGTACGACGACCCCCGCGACGACGCTGGGTTGCTCGGCGTCCAGGAGCCGGCGTACGA
AGCAGGCCGCCGGCGCGGCC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLPRSLSGREGPAAAKV
REFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVVDQAAAVLILQHALDTERATGAAPGEIVEET

Sequences:

>Translated_156_residues
MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLPRSLSGREGPAAAKV
REFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVVDQAAAVLILQHALDTERATGAAPGEIVEET
>Mature_156_residues
MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEVVVGLPRSLSGREGPAAAKV
REFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGGKRRAVVDQAAAVLILQHALDTERATGAAPGEIVEET

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=140, Percent_Identity=33.5714285714286, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_NOCSJ (A1SJC8)

Other databases:

- EMBL:   CP000509
- RefSeq:   YP_923600.1
- ProteinModelPortal:   A1SJC8
- SMR:   A1SJC8
- STRING:   A1SJC8
- GeneID:   4599508
- GenomeReviews:   CP000509_GR
- KEGG:   nca:Noca_2408
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   A1SJC8
- ProtClustDB:   PRK00109
- BioCyc:   NSP35761:NOCA_2408-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16311; Mature: 16311

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLE
CCCCCEEECCCCCCEEEEECCCCCCCEECCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
VVVGLPRSLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGG
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
KRRAVVDQAAAVLILQHALDTERATGAAPGEIVEET
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLE
CCCCCEEECCCCCCEEEEECCCCCCCEECCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
VVVGLPRSLSGREGPAAAKVREFAGRLAARVAPVPVRLVDERMTTVSAEAMLRDQGRTGG
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
KRRAVVDQAAAVLILQHALDTERATGAAPGEIVEET
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA