| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716549
Identifier: 119716549
GI number: 119716549
Start: 2476104
End: 2478893
Strand: Direct
Name: 119716549
Synonym: Noca_2322
Alternate gene names: NA
Gene position: 2476104-2478893 (Clockwise)
Preceding gene: 119716548
Following gene: 119716551
Centisome position: 49.66
GC content: 70.9
Gene sequence:
>2790_bases ATGTCCACGACGTCTCGGACGTCGCGGCGAGGGTTGGCGGTCGTCGCCACCCTCGCAGCGGCGGCGACCGGAATCACCCT GGCCCCACTCCCGGCCGCCCAGGCCGCCAGCACCGGCCTCGTCATCAGCGAGGTGTACGGCGGCGGCGGCAACAGCGGCG CGACCTACACGAACGACTTCATCGAGCTCTACAACCCCACGTCCGCGCCGATCTCGGTCAACGGCATGTCGGTGCAGTAC CGCAGCAGCGGCAGCGTCAACCCGGCGACCGGCGTCACCGCGCTGAGCGGGTCGGTCCCCGCCGGCGGTCACTATCTCGT CCAGCAGGCCGCCGGAGCCGGTGGCACGACCGCGCTGCCGACGCCGGACGCGACCGGGTCGATCGCCATGAGCGGCTCGG CCTTCACCGTCTGGCTCGCCAGTGGCACCACCGCGCTGAACCCGACCGCCGACGGCACCGCCGTACGCGACGGGATCGTC GACCTGGTCGGCGTCAACAGCAACACCTTCGAGACCGCCAAGGCCGCGGTGCTGAGCAACACCACCTCCAGCAGCCGCAC CGCGCCCGACAACGACAACAACGCGGCCGAGTTCACGGCGGGTGCCCCGGACCCGCAGAACAGCAGCGGTGGCACCACCG AGCCGCCGGCCGAGCCGACCGCCGCCACCATCGCCGAGATCCAGGGCACCGGAGACACCTCGCCGCTGGTCGGGGAGACG GTCGTGACCGAGGGCGTCGTGACAGCGGCGTACCCGAGTGGCGGCTACAACGGCTTCTACCTCCAGACGCCGGGCACCCC GGACACGCCGGGAGCGTCCGACGCGGTCTTCGTCTACGGCTCCGCCGCGACCGCGACCGTCGCGATCGGCGACAGCGTCG AGGTGACCGGCGACGTCAGCGAGTTCAACGGCACCACCGAGATCTCGGCGGCCGCAGCCGACGTCGTCGACCTGACCGAC CCGCTGGGCACCGTCAGCCCGCTCGACGTGCCGTGGAGCGAGCTGGACACCGCGGCCGAGAAGGAGTCGCACGAGGGCGA GCTGGTCACCCCGCAGGGTGCGTTCACCGTCAGCGACAACTACGACACCAACTTCTACGCCTCGTTCACCCTCGCCGCCG GCGACCACCCGCTGGTCCAGCCGACCGACGTCGTCGACGCCCAGGACACCGCCGCGGTCGCCGCGGTCCAGGCCGACAAC GCCGCCCGCACGATCACCCTCGACGACGGCGCCAGCATCAACTTCAACTCGAGCGCGAACAAGGGCATCCCGCTGCCGTG GCTCTCGCAGGACAACCCGGTCCGCATCGGCTCGGCGGTCACGTTCCACCAGCCGCTGGTGCTGGAGTACCGCAACAGCA TGTGGAACCTGCAGCCCACCAGCCAGGTGACCGGCGCGGGGACCGACGTTGCGACCTTCACCAACACGCGCACGGCCGCC CCCGAGGCGGTCGGCGGCGACATCCGGCTGGCGACGTTCAACGTGCTGAACTACTTCCCGACCACCGGTGCCGACTACGA GGCGGCCGGCCTGGGGACCTGCACCTACTACAACGACCGCGCCGGCAACCACATCACCGTGAACCGGTGCGGCACCGACG CGTCGCCCGGTCCGCGCGGAGCGGCCGACGACGTCAACCTCCAGCGGCAGCAGGCCAAGATCGTCGCGGCGATCGACAAC CTGGGCGCCAGCATCGTGTCGCTCGAGGAGATCGAGAACTCGGTGAAGTTCGGCCTGGACCGCGACTACGCCGTCTCGAC GCTCGTCGACGCCCTCAACGCAGCGGCCGGCTCGGGCGTCTGGGCGTACGCGCCCTCGCCGGACGCCGCCGACCTGCCGA CGGTCGCCGAGCAGGACGTCATCCGCACGGCCTTCATCTACAAGCCGGCCGACGTCTCGCTGGTGGGTCCGTCGCACGTG CTGACCGGGTCGGCGGCCTTCGCCGACGCGCGTGAGCCGCTCGCGCAGGGGTTCAAGGCCACCGGCGCGCCGGACGCCGA CGCGTTCCTCGTGATCGTCAACCACTTCAAGTCCAAGGGCTCGGGCGTCGACGACGGCACCGGCCAGGGCAACGCGAACC CGGACCGCATCGCCCAGGCCGAGGCGCTCAGCGACTTCGCCATCCAGGTGGCCGCGGGCCTCGACACCGACGCCGTCTTC CTGACCGGTGACTTCAACTCCTACACCCAGGAGGACCCGCTCCAGGTCCTGTACGGCGCCGGCTACGACAACCTCGAGTC GACCACCGACCCCGAGGAGACGACGTACAGCTTCGACGGCCTCGCCGGCTCGCTCGACCACGTGCTGGCCAGCCCGGCCG CCGCGGCGATGGTCACCGGGGTGGACATCTGGAACATCAACGCCGACGAGTCGATCGCGTTCGAGTACAGCCGCTACAAC TACAACGCGACCGACTTCTACGCGCCCGGCCCCTACCGTGCCTCCGACCACGACCCCGAGGTCGTCGGCATCGACCTGCC CGTCATCGGCCCGGTCGCATCGACGGTGACCGCCGAGGACGTGACGGTCGTGTTCAGCAAGGAGCGTGCCGAGATCCCGG TGAGCGTGACGGCCGATCACGTCGTGCCGACCGGTGAGGTGACGATCCTCGACGGCGACCAGGTGCTCGGGACGGCCACC CTGACGGACGGCAGCGCGGTCGTGGTGCTGCCGAAGAAGGCCCTCAAGCGCGGCACCCACGTGCTCACGGTGGCCTACTC CGGTGACCAGGCCGTTGCCGCCGGCAGCACCACCGTGACGGTGCGGGTCACCAACCCCGCCGGGCACTGA
Upstream 100 bases:
>100_bases CGGTCCGCGTCAAGCGGCGCTAGGCACCACCCTCTCGTCGGGGCCCGCCGTCAGGCGGGCCCCGACCCAGGCGTCACCCC ACCCACTCGGAAGGATCCCC
Downstream 100 bases:
>100_bases CCGACCACGTCGACCCGCCCGGGACTCTCGGGCGGGTCAACGTGGCGTGAGGTCGAACGCCGCGCGCACGAGGGCCAGGT GGCTGAACGCCTGGGGGAAG
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Extracellular Nuclease; Nuclease; Endonuclease/Exonuclease/Phosphatase Family Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Extracellular Ribonuclease/Nuclease Fusion Protein; Extracellular Nuclease-Like Protein; Endonuclease/Exonuclease/Phosphatase Family; 5-Nucleotidase; PKD Domain-Containing Protein; Exported Nuclease; Outer Membrane Adhesin Like Proteiin; Extracellular Nuclease Surface-Anchored; LPXTG-Motif Cell Wall Anchor Domain Protein; Calcineurin-Like Phosphoesterase; Endonuclease I; Extracellular Nuclease-Like; Glutamate-Cysteine Ligase/Putative Amino Acid Ligase; Ig Domain Domain Protein; Extracellular Nuclease/Phosphatase; 5-Nucleotidase Family Protein; Secreted Protein
Number of amino acids: Translated: 929; Mature: 928
Protein sequence:
>929_residues MSTTSRTSRRGLAVVATLAAAATGITLAPLPAAQAASTGLVISEVYGGGGNSGATYTNDFIELYNPTSAPISVNGMSVQY RSSGSVNPATGVTALSGSVPAGGHYLVQQAAGAGGTTALPTPDATGSIAMSGSAFTVWLASGTTALNPTADGTAVRDGIV DLVGVNSNTFETAKAAVLSNTTSSSRTAPDNDNNAAEFTAGAPDPQNSSGGTTEPPAEPTAATIAEIQGTGDTSPLVGET VVTEGVVTAAYPSGGYNGFYLQTPGTPDTPGASDAVFVYGSAATATVAIGDSVEVTGDVSEFNGTTEISAAAADVVDLTD PLGTVSPLDVPWSELDTAAEKESHEGELVTPQGAFTVSDNYDTNFYASFTLAAGDHPLVQPTDVVDAQDTAAVAAVQADN AARTITLDDGASINFNSSANKGIPLPWLSQDNPVRIGSAVTFHQPLVLEYRNSMWNLQPTSQVTGAGTDVATFTNTRTAA PEAVGGDIRLATFNVLNYFPTTGADYEAAGLGTCTYYNDRAGNHITVNRCGTDASPGPRGAADDVNLQRQQAKIVAAIDN LGASIVSLEEIENSVKFGLDRDYAVSTLVDALNAAAGSGVWAYAPSPDAADLPTVAEQDVIRTAFIYKPADVSLVGPSHV LTGSAAFADAREPLAQGFKATGAPDADAFLVIVNHFKSKGSGVDDGTGQGNANPDRIAQAEALSDFAIQVAAGLDTDAVF LTGDFNSYTQEDPLQVLYGAGYDNLESTTDPEETTYSFDGLAGSLDHVLASPAAAAMVTGVDIWNINADESIAFEYSRYN YNATDFYAPGPYRASDHDPEVVGIDLPVIGPVASTVTAEDVTVVFSKERAEIPVSVTADHVVPTGEVTILDGDQVLGTAT LTDGSAVVVLPKKALKRGTHVLTVAYSGDQAVAAGSTTVTVRVTNPAGH
Sequences:
>Translated_929_residues MSTTSRTSRRGLAVVATLAAAATGITLAPLPAAQAASTGLVISEVYGGGGNSGATYTNDFIELYNPTSAPISVNGMSVQY RSSGSVNPATGVTALSGSVPAGGHYLVQQAAGAGGTTALPTPDATGSIAMSGSAFTVWLASGTTALNPTADGTAVRDGIV DLVGVNSNTFETAKAAVLSNTTSSSRTAPDNDNNAAEFTAGAPDPQNSSGGTTEPPAEPTAATIAEIQGTGDTSPLVGET VVTEGVVTAAYPSGGYNGFYLQTPGTPDTPGASDAVFVYGSAATATVAIGDSVEVTGDVSEFNGTTEISAAAADVVDLTD PLGTVSPLDVPWSELDTAAEKESHEGELVTPQGAFTVSDNYDTNFYASFTLAAGDHPLVQPTDVVDAQDTAAVAAVQADN AARTITLDDGASINFNSSANKGIPLPWLSQDNPVRIGSAVTFHQPLVLEYRNSMWNLQPTSQVTGAGTDVATFTNTRTAA PEAVGGDIRLATFNVLNYFPTTGADYEAAGLGTCTYYNDRAGNHITVNRCGTDASPGPRGAADDVNLQRQQAKIVAAIDN LGASIVSLEEIENSVKFGLDRDYAVSTLVDALNAAAGSGVWAYAPSPDAADLPTVAEQDVIRTAFIYKPADVSLVGPSHV LTGSAAFADAREPLAQGFKATGAPDADAFLVIVNHFKSKGSGVDDGTGQGNANPDRIAQAEALSDFAIQVAAGLDTDAVF LTGDFNSYTQEDPLQVLYGAGYDNLESTTDPEETTYSFDGLAGSLDHVLASPAAAAMVTGVDIWNINADESIAFEYSRYN YNATDFYAPGPYRASDHDPEVVGIDLPVIGPVASTVTAEDVTVVFSKERAEIPVSVTADHVVPTGEVTILDGDQVLGTAT LTDGSAVVVLPKKALKRGTHVLTVAYSGDQAVAAGSTTVTVRVTNPAGH >Mature_928_residues STTSRTSRRGLAVVATLAAAATGITLAPLPAAQAASTGLVISEVYGGGGNSGATYTNDFIELYNPTSAPISVNGMSVQYR SSGSVNPATGVTALSGSVPAGGHYLVQQAAGAGGTTALPTPDATGSIAMSGSAFTVWLASGTTALNPTADGTAVRDGIVD LVGVNSNTFETAKAAVLSNTTSSSRTAPDNDNNAAEFTAGAPDPQNSSGGTTEPPAEPTAATIAEIQGTGDTSPLVGETV VTEGVVTAAYPSGGYNGFYLQTPGTPDTPGASDAVFVYGSAATATVAIGDSVEVTGDVSEFNGTTEISAAAADVVDLTDP LGTVSPLDVPWSELDTAAEKESHEGELVTPQGAFTVSDNYDTNFYASFTLAAGDHPLVQPTDVVDAQDTAAVAAVQADNA ARTITLDDGASINFNSSANKGIPLPWLSQDNPVRIGSAVTFHQPLVLEYRNSMWNLQPTSQVTGAGTDVATFTNTRTAAP EAVGGDIRLATFNVLNYFPTTGADYEAAGLGTCTYYNDRAGNHITVNRCGTDASPGPRGAADDVNLQRQQAKIVAAIDNL GASIVSLEEIENSVKFGLDRDYAVSTLVDALNAAAGSGVWAYAPSPDAADLPTVAEQDVIRTAFIYKPADVSLVGPSHVL TGSAAFADAREPLAQGFKATGAPDADAFLVIVNHFKSKGSGVDDGTGQGNANPDRIAQAEALSDFAIQVAAGLDTDAVFL TGDFNSYTQEDPLQVLYGAGYDNLESTTDPEETTYSFDGLAGSLDHVLASPAAAAMVTGVDIWNINADESIAFEYSRYNY NATDFYAPGPYRASDHDPEVVGIDLPVIGPVASTVTAEDVTVVFSKERAEIPVSVTADHVVPTGEVTILDGDQVLGTATL TDGSAVVVLPKKALKRGTHVLTVAYSGDQAVAAGSTTVTVRVTNPAGH
Specific function: Unknown
COG id: COG2374
COG function: function code R; Predicted extracellular nuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94795; Mature: 94664
Theoretical pI: Translated: 3.90; Mature: 3.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTSRTSRRGLAVVATLAAAATGITLAPLPAAQAASTGLVISEVYGGGGNSGATYTNDF CCCCCCCCCCCEEHHHHHHHHHCCCEEECCCCHHHCCCCEEEEEEECCCCCCCCCEECCC IELYNPTSAPISVNGMSVQYRSSGSVNPATGVTALSGSVPAGGHYLVQQAAGAGGTTALP CEEECCCCCCEEECCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEHHCCCCCCCCCC TPDATGSIAMSGSAFTVWLASGTTALNPTADGTAVRDGIVDLVGVNSNTFETAKAAVLSN CCCCCCCEEECCCEEEEEEECCCEECCCCCCCCHHHCCCEEEEECCCCCCHHHHHHEEEC TTSSSRTAPDNDNNAAEFTAGAPDPQNSSGGTTEPPAEPTAATIAEIQGTGDTSPLVGET CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCH VVTEGVVTAAYPSGGYNGFYLQTPGTPDTPGASDAVFVYGSAATATVAIGDSVEVTGDVS HHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHH EFNGTTEISAAAADVVDLTDPLGTVSPLDVPWSELDTAAEKESHEGELVTPQGAFTVSDN HCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCEEECCC YDTNFYASFTLAAGDHPLVQPTDVVDAQDTAAVAAVQADNAARTITLDDGASINFNSSAN CCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEECCCCC KGIPLPWLSQDNPVRIGSAVTFHQPLVLEYRNSMWNLQPTSQVTGAGTDVATFTNTRTAA CCCCCCCCCCCCCEEECCEEEECCCEEEEEHHCCCCCCCCCCCCCCCCCEEEECCCCCCC PEAVGGDIRLATFNVLNYFPTTGADYEAAGLGTCTYYNDRAGNHITVNRCGTDASPGPRG CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCC AADDVNLQRQQAKIVAAIDNLGASIVSLEEIENSVKFGLDRDYAVSTLVDALNAAAGSGV CCCCCCHHHHHHEEEEEHHHCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCE WAYAPSPDAADLPTVAEQDVIRTAFIYKPADVSLVGPSHVLTGSAAFADAREPLAQGFKA EEECCCCCCCCCCCHHHHHHEEEEEEECCCCEEEECCCCEEECCHHHHHHHHHHHHCCCC TGAPDADAFLVIVNHFKSKGSGVDDGTGQGNANPDRIAQAEALSDFAIQVAAGLDTDAVF CCCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCEEE LTGDFNSYTQEDPLQVLYGAGYDNLESTTDPEETTYSFDGLAGSLDHVLASPAAAAMVTG EEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCHHHHEEEC VDIWNINADESIAFEYSRYNYNATDFYAPGPYRASDHDPEVVGIDLPVIGPVASTVTAED EEEEECCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEECCC VTVVFSKERAEIPVSVTADHVVPTGEVTILDGDQVLGTATLTDGSAVVVLPKKALKRGTH EEEEEECCCCCCCEEEEECCEECCCCEEEEECCCEEEEEEECCCCEEEEECHHHHHCCCE VLTVAYSGDQAVAAGSTTVTVRVTNPAGH EEEEEECCCCEEECCCEEEEEEECCCCCC >Mature Secondary Structure STTSRTSRRGLAVVATLAAAATGITLAPLPAAQAASTGLVISEVYGGGGNSGATYTNDF CCCCCCCCCCEEHHHHHHHHHCCCEEECCCCHHHCCCCEEEEEEECCCCCCCCCEECCC IELYNPTSAPISVNGMSVQYRSSGSVNPATGVTALSGSVPAGGHYLVQQAAGAGGTTALP CEEECCCCCCEEECCEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEHHCCCCCCCCCC TPDATGSIAMSGSAFTVWLASGTTALNPTADGTAVRDGIVDLVGVNSNTFETAKAAVLSN CCCCCCCEEECCCEEEEEEECCCEECCCCCCCCHHHCCCEEEEECCCCCCHHHHHHEEEC TTSSSRTAPDNDNNAAEFTAGAPDPQNSSGGTTEPPAEPTAATIAEIQGTGDTSPLVGET CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCH VVTEGVVTAAYPSGGYNGFYLQTPGTPDTPGASDAVFVYGSAATATVAIGDSVEVTGDVS HHHCCEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEECHH EFNGTTEISAAAADVVDLTDPLGTVSPLDVPWSELDTAAEKESHEGELVTPQGAFTVSDN HCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCEEECCC YDTNFYASFTLAAGDHPLVQPTDVVDAQDTAAVAAVQADNAARTITLDDGASINFNSSAN CCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEEECCCCC KGIPLPWLSQDNPVRIGSAVTFHQPLVLEYRNSMWNLQPTSQVTGAGTDVATFTNTRTAA CCCCCCCCCCCCCEEECCEEEECCCEEEEEHHCCCCCCCCCCCCCCCCCEEEECCCCCCC PEAVGGDIRLATFNVLNYFPTTGADYEAAGLGTCTYYNDRAGNHITVNRCGTDASPGPRG CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCC AADDVNLQRQQAKIVAAIDNLGASIVSLEEIENSVKFGLDRDYAVSTLVDALNAAAGSGV CCCCCCHHHHHHEEEEEHHHCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCE WAYAPSPDAADLPTVAEQDVIRTAFIYKPADVSLVGPSHVLTGSAAFADAREPLAQGFKA EEECCCCCCCCCCCHHHHHHEEEEEEECCCCEEEECCCCEEECCHHHHHHHHHHHHCCCC TGAPDADAFLVIVNHFKSKGSGVDDGTGQGNANPDRIAQAEALSDFAIQVAAGLDTDAVF CCCCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEEECCCCCEEE LTGDFNSYTQEDPLQVLYGAGYDNLESTTDPEETTYSFDGLAGSLDHVLASPAAAAMVTG EEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCHHHHEEEC VDIWNINADESIAFEYSRYNYNATDFYAPGPYRASDHDPEVVGIDLPVIGPVASTVTAED EEEEECCCCCEEEEEEEEECCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEECCC VTVVFSKERAEIPVSVTADHVVPTGEVTILDGDQVLGTATLTDGSAVVVLPKKALKRGTH EEEEEECCCCCCCEEEEECCEECCCCEEEEECCCEEEEEEECCCCEEEEECHHHHHCCCE VLTVAYSGDQAVAAGSTTVTVRVTNPAGH EEEEEECCCCEEECCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA