Click here to switch to the map view.

The map label for this gene is 119716543

Identifier: 119716543

GI number: 119716543

Start: 2465130

End: 2466815

Strand: Direct

Name: 119716543

Synonym: Noca_2316

Alternate gene names: NA

Gene position: 2465130-2466815 (Clockwise)

Preceding gene: 119716542

Following gene: 119716544

Centisome position: 49.44

GC content: 69.63

Gene sequence:

>1686_bases
ATGAGTCATCCCCATCCCGAGCTCTCCGCACCGGCCGCACTTCCGACGGGGGGCCTGCGGGTCATCCCGCTGGGCGGGCT
GGGCGAGGTCGGCCGCAACATGACGGCCTTCGAGTACGACGGGCGCCTGCTGCTGGTCGACTGCGGGGTGCTGTTCCCGG
AGGACCACCACCCCGGCGTCGACCTGATCCTCCCGGACTGGTCCTCGATCCGCGACCGGCTCGACGACGTCGAGGCGCTG
GTGCTGACCCACGGGCACGAGGACCACATCGGCGCGACGCCGTACCTGCTGCGCGAGCGGGGGGACATCCCGCTCGTCGG
GTCGGAGCTGACGTTGGCGCTGCTCGGCAGCAAGCTGCGCGAGCACCGGCTCAGGGAGACCGTGCACCACGTGGTCCGGG
AGGGCGACCGGGCGCGCTTCGGCCCGTTCGACCTGGAGTTCGTGGCGGTCAACCACTCGATCCCCGACGCGCTCGCGGTC
GCCATCCGCACCGGCGCCGGCATGGTGCTGCACACGGGTGACTTCAAGATGGACCAGCTGCCGCTGGACGGCCGGATCAC
GGACCTGCGAGCGTTCGCGCGGCTGGGGGAGGAGGGCGTCGACCTCTTCCTCACCGACTCCACGAACGCCGAGACACCCG
GCTTCACCCCGGCGGAGAAGGCCATCACCCCGGTGATCGACCAGGTCTTCCGCGACTCCAAGCAGCGGATCATCGTCGCG
TGCTTCGCCTCCCACGTGCACCGGGTCCAGCAGGTGCTGGACGCGGCGTACGCCCACGAACGTCAGGTCGCGTACGTCGG
CCGCTCGATGGTCCGCAACATGGGCATCGCCCGCGACCTGGGCTACCTCCAAGTCCCGCCGAGCGTGCTGGTGGACACCA
AGGACCTCGCCGACCTGCCTCCCGAGCGCCAGGTGCTGATCTCGACGGGCTCCCAGGGCGAACCGATGAGTGCGCTGTCG
CGGATCGCCCAGCGCAACCACAACTTCGTGCACATCGAGGAGGGCGACACCGTCCTGCTCGCCTCGAGCCTGATCCCGGG
CAACGAGAACGCCGTGTACCGGGTGATCAACGGCCTGGCCCGGTGGGGGGCGCGGGTCGTGCACAAGGGGAACGCGATGG
TGCACGTGTCCGGTCACGCCAGCGCCGGCGAGCTGCTCTACTGCTACAACATCGTCAAGCCGCGCAACGTGCTGCCGGTG
CACGGCGAGATCCGGCACATGCTCGCCAACGGAGAGCTCGCCCGGGAGACCGGCGTCGAGAACGTCGTGATCGCCGAGGA
CGGCGTGGTGGTCGACCTGATCGACGGCGTCGCCTCGATCGCGGGCAAGGTGGACTGCGGGTACGTCTTCGTCGACGGCT
CCTCGGTCGGCGACATCACCGAGTCCGACCTCAAGGACCGGCGCATCCTCGGCGAGGAGGGCTTCATCTCGGTGATCGTC
GTGGTCGACTCGGTCAGCGGCAAGGTCGCCGGTGGCCCGGAGATCCACGCCCGCGGTTTCGCCGAGGACGACTCGACCTT
CGACGAGATCAAGCAGCCGATCATCGACGCGCTCGACCTCGCGGTCGCCGAGGGCAACACCGACTCCTACCAGCTCCAGC
AGACGGTGCGCCGCGTGGTCGGTCGTTGGGTCAGCGCCACCCACCGCCGCCGCCCGATGATCATCCCCGTGGTGATCGAG
GCCTGA

Upstream 100 bases:

>100_bases
ACAACCGCAACGTCCGGGCACCGCTGGTGCCGTTGGACGACGACGAGGTGGCCGCGCTGCGAGCAGGGCTCGCCGCATCC
GGCCTCCTGTAAGGAACCAG

Downstream 100 bases:

>100_bases
GGCAGTCGCGCCGACCAGGTCGGTTTCCCCGGTGAACCGGGGAAACTGGAACTTCTCGGCCGAAGTTTCGGGCCCGAAGT
GGCAACTTCCCCGGTGAACC

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 561; Mature: 560

Protein sequence:

>561_residues
MSHPHPELSAPAALPTGGLRVIPLGGLGEVGRNMTAFEYDGRLLLVDCGVLFPEDHHPGVDLILPDWSSIRDRLDDVEAL
VLTHGHEDHIGATPYLLRERGDIPLVGSELTLALLGSKLREHRLRETVHHVVREGDRARFGPFDLEFVAVNHSIPDALAV
AIRTGAGMVLHTGDFKMDQLPLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPAEKAITPVIDQVFRDSKQRIIVA
CFASHVHRVQQVLDAAYAHERQVAYVGRSMVRNMGIARDLGYLQVPPSVLVDTKDLADLPPERQVLISTGSQGEPMSALS
RIAQRNHNFVHIEEGDTVLLASSLIPGNENAVYRVINGLARWGARVVHKGNAMVHVSGHASAGELLYCYNIVKPRNVLPV
HGEIRHMLANGELARETGVENVVIAEDGVVVDLIDGVASIAGKVDCGYVFVDGSSVGDITESDLKDRRILGEEGFISVIV
VVDSVSGKVAGGPEIHARGFAEDDSTFDEIKQPIIDALDLAVAEGNTDSYQLQQTVRRVVGRWVSATHRRRPMIIPVVIE
A

Sequences:

>Translated_561_residues
MSHPHPELSAPAALPTGGLRVIPLGGLGEVGRNMTAFEYDGRLLLVDCGVLFPEDHHPGVDLILPDWSSIRDRLDDVEAL
VLTHGHEDHIGATPYLLRERGDIPLVGSELTLALLGSKLREHRLRETVHHVVREGDRARFGPFDLEFVAVNHSIPDALAV
AIRTGAGMVLHTGDFKMDQLPLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPAEKAITPVIDQVFRDSKQRIIVA
CFASHVHRVQQVLDAAYAHERQVAYVGRSMVRNMGIARDLGYLQVPPSVLVDTKDLADLPPERQVLISTGSQGEPMSALS
RIAQRNHNFVHIEEGDTVLLASSLIPGNENAVYRVINGLARWGARVVHKGNAMVHVSGHASAGELLYCYNIVKPRNVLPV
HGEIRHMLANGELARETGVENVVIAEDGVVVDLIDGVASIAGKVDCGYVFVDGSSVGDITESDLKDRRILGEEGFISVIV
VVDSVSGKVAGGPEIHARGFAEDDSTFDEIKQPIIDALDLAVAEGNTDSYQLQQTVRRVVGRWVSATHRRRPMIIPVVIE
A
>Mature_560_residues
SHPHPELSAPAALPTGGLRVIPLGGLGEVGRNMTAFEYDGRLLLVDCGVLFPEDHHPGVDLILPDWSSIRDRLDDVEALV
LTHGHEDHIGATPYLLRERGDIPLVGSELTLALLGSKLREHRLRETVHHVVREGDRARFGPFDLEFVAVNHSIPDALAVA
IRTGAGMVLHTGDFKMDQLPLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPAEKAITPVIDQVFRDSKQRIIVAC
FASHVHRVQQVLDAAYAHERQVAYVGRSMVRNMGIARDLGYLQVPPSVLVDTKDLADLPPERQVLISTGSQGEPMSALSR
IAQRNHNFVHIEEGDTVLLASSLIPGNENAVYRVINGLARWGARVVHKGNAMVHVSGHASAGELLYCYNIVKPRNVLPVH
GEIRHMLANGELARETGVENVVIAEDGVVVDLIDGVASIAGKVDCGYVFVDGSSVGDITESDLKDRRILGEEGFISVIVV
VDSVSGKVAGGPEIHARGFAEDDSTFDEIKQPIIDALDLAVAEGNTDSYQLQQTVRRVVGRWVSATHRRRPMIIPVVIEA

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 60988; Mature: 60857

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHPHPELSAPAALPTGGLRVIPLGGLGEVGRNMTAFEYDGRLLLVDCGVLFPEDHHPGV
CCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCEEEEECCEEEEEECCEECCCCCCCCC
DLILPDWSSIRDRLDDVEALVLTHGHEDHIGATPYLLRERGDIPLVGSELTLALLGSKLR
EEECCCHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHH
EHRLRETVHHVVREGDRARFGPFDLEFVAVNHSIPDALAVAIRTGAGMVLHTGDFKMDQL
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEECCCCCCCCC
PLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPAEKAITPVIDQVFRDSKQRIIVA
CCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHH
CFASHVHRVQQVLDAAYAHERQVAYVGRSMVRNMGIARDLGYLQVPPSVLVDTKDLADLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEECCHHHEEECHHHHCCC
PERQVLISTGSQGEPMSALSRIAQRNHNFVHIEEGDTVLLASSLIPGNENAVYRVINGLA
CCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHH
RWGARVVHKGNAMVHVSGHASAGELLYCYNIVKPRNVLPVHGEIRHMLANGELARETGVE
HHHHHEEECCCEEEEEECCCCCCCEEEEEECCCCCCEECCCHHHHHHHHCCCHHHHCCCC
NVVIAEDGVVVDLIDGVASIAGKVDCGYVFVDGSSVGDITESDLKDRRILGEEGFISVIV
EEEEECCCEEEEHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEE
VVDSVSGKVAGGPEIHARGFAEDDSTFDEIKQPIIDALDLAVAEGNTDSYQLQQTVRRVV
EEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH
GRWVSATHRRRPMIIPVVIEA
HHHHHHHHCCCCEEEEEEEEC
>Mature Secondary Structure 
SHPHPELSAPAALPTGGLRVIPLGGLGEVGRNMTAFEYDGRLLLVDCGVLFPEDHHPGV
CCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCEEEEECCEEEEEECCEECCCCCCCCC
DLILPDWSSIRDRLDDVEALVLTHGHEDHIGATPYLLRERGDIPLVGSELTLALLGSKLR
EEECCCHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHCCCCCCEECCHHHHHHHHHHHH
EHRLRETVHHVVREGDRARFGPFDLEFVAVNHSIPDALAVAIRTGAGMVLHTGDFKMDQL
HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCEEEECCCCCCCCC
PLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPAEKAITPVIDQVFRDSKQRIIVA
CCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHH
CFASHVHRVQQVLDAAYAHERQVAYVGRSMVRNMGIARDLGYLQVPPSVLVDTKDLADLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEECCHHHEEECHHHHCCC
PERQVLISTGSQGEPMSALSRIAQRNHNFVHIEEGDTVLLASSLIPGNENAVYRVINGLA
CCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHH
RWGARVVHKGNAMVHVSGHASAGELLYCYNIVKPRNVLPVHGEIRHMLANGELARETGVE
HHHHHEEECCCEEEEEECCCCCCCEEEEEECCCCCCEECCCHHHHHHHHCCCHHHHCCCC
NVVIAEDGVVVDLIDGVASIAGKVDCGYVFVDGSSVGDITESDLKDRRILGEEGFISVIV
EEEEECCCEEEEHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEE
VVDSVSGKVAGGPEIHARGFAEDDSTFDEIKQPIIDALDLAVAEGNTDSYQLQQTVRRVV
EEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHH
GRWVSATHRRRPMIIPVVIEA
HHHHHHHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]