| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119716536
Identifier: 119716536
GI number: 119716536
Start: 2458905
End: 2460452
Strand: Direct
Name: 119716536
Synonym: Noca_2309
Alternate gene names: NA
Gene position: 2458905-2460452 (Clockwise)
Preceding gene: 119716535
Following gene: 119716537
Centisome position: 49.32
GC content: 75.71
Gene sequence:
>1548_bases ATGTCGGGCATGCGGAACGACGCCGACTTCGCGGCGTACCTGGCAGCGCGCTGGCCGTTCCTGCTGCGGTCGCTGCTGCT GATCGGCTGCCCGCCCGGCGCGGCGGAGGCGATCGCGCAGACCGGCCTGGCCCGGTGCTACGCCGCCTGGGACGAGGTGC TCGAGACCGACGACGTCGACGCCACCGTCTACCGCGTGGTGCTCGACGTCTGGCACCGCCGCAAGCGCCCGCCGGTGCCG CCGGTGCCGCCGGTCGAGTCTGGGGGCGAGCCCGGCAGCCAGGCCCCGCCCCGGACCGAGGCCGGGAGCGAGCACCAGGT CGTCGACCCGGCCGAGCTGCGCCGGCGGCTCGAGGCGCGGCTCGCCGAGCTGACGCCGGGGGACCGCGAGGCGGTGGTGC TCCACGTCGTCGCCGGCCTCTCCGAGACCCAGGTGGCCGAGGTGCTGGACCGCCCGGTCCGCAGGATCAGCGCGCCGGCG TCCCCCGAGGACCTGCGGATCGTGACCGAGTCCATCGAGGTGCTCGCCCCGCCCTTCGACGGCGTGGTCGCGGAGGCCGG TGTCCGGCGCCGCCGACGCCGGAGGATCGTGGTCGCCTCGGTCGCCGCAGCCGTCCTCGTCCTCGCGGCGGCCGGCTGGG CGCTGTCCCGTTCGCCGGCCGAGCGGCCGGCGGACGCCGACTGGGTGGTCCTGCCGCAGCCGAACCCCGTCGACGTGCCC TGGTACGCCGGCGGGCTGCTGCACCTCTCGACGGTCGCCATCCGGATGCCGGCCGTGGGCGACCTCGCGGCGGTCAACGA CGGGGCCGTGTTCACCGACGCCGAGGGGACGGTCTGGTTCGCCGCGGGCGACGGCGCGGTCACCGAGATCGGCCGGACCG CGCCCGACGCCAGGGTGGCGGTGTCGGACCAGACCGACTGGGCCGCGTGGGTGGATCCCTCCGCCGACGTACCCCGCCTG GTGGTGCACAACCTCGTGTCGGGCAAGGACACCGGCCTGGACCTGCCCGGGTCGGGCTCGGTGCTGGCCGTCGACCAGGC GCGGGTCTACTACACGACGACCGAGGGCGACTTCCAGTGGGAGCCGGCGGGGGACCCGATGCTGCTGGACCGCACCGGCC TGCTGGACGTGGAGTCGGCCAGCCGGGTCTACGCCGACTCCCGCGGGATCGAGATCGTGCAGGCGATCTTCCGGGTCGCG AACCTGCGTCCGGGGATCGGCGCCCTGCTCTCGCCCGGCGGCAACTTCGTGCTGAGCCGGGCCGGCGACGGCTCGGTGCC GTTCCGGCCGCTGCTGTACGACGCGCGCTCCGGCGACCGGATGCGCTCCGGGCTGGCCGCCGGCGAGCTCGCCCTGGACG CGACGTTCGGCCCCAACCACACGGTGAGCTACTTGGTCGCGCCCCGCTCCGAGATCGGCGCACCGCCGGCGGTCGACGGC AACACCGAGCCGCTGGTCATGCTGCGCACCTGCGACCTGGACCCCGTGGTGTGCCACGACGTGATCCCGCTGGCGCGCCC GGGTGAGCGGCCGCTGCTGGGCCACTGA
Upstream 100 bases:
>100_bases CTGTTCGAGCACGACCGTCGCGTCTACGGACCGATGTCCCTGCACGCACAGTAGGGGCCGTGGCCTCGGCCCTTGGTGGG CGACCGGCACCAGGAGAAGG
Downstream 100 bases:
>100_bases GCGGGTCGCTGCCAGACTCCCGGCATGCGCTTCAGCCAGGTCGACGTCTTCTCCAGCCAGCCGCTGCGCGGCAACCCGGT CGCAGTCGTGCACGACGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 515; Mature: 514
Protein sequence:
>515_residues MSGMRNDADFAAYLAARWPFLLRSLLLIGCPPGAAEAIAQTGLARCYAAWDEVLETDDVDATVYRVVLDVWHRRKRPPVP PVPPVESGGEPGSQAPPRTEAGSEHQVVDPAELRRRLEARLAELTPGDREAVVLHVVAGLSETQVAEVLDRPVRRISAPA SPEDLRIVTESIEVLAPPFDGVVAEAGVRRRRRRRIVVASVAAAVLVLAAAGWALSRSPAERPADADWVVLPQPNPVDVP WYAGGLLHLSTVAIRMPAVGDLAAVNDGAVFTDAEGTVWFAAGDGAVTEIGRTAPDARVAVSDQTDWAAWVDPSADVPRL VVHNLVSGKDTGLDLPGSGSVLAVDQARVYYTTTEGDFQWEPAGDPMLLDRTGLLDVESASRVYADSRGIEIVQAIFRVA NLRPGIGALLSPGGNFVLSRAGDGSVPFRPLLYDARSGDRMRSGLAAGELALDATFGPNHTVSYLVAPRSEIGAPPAVDG NTEPLVMLRTCDLDPVVCHDVIPLARPGERPLLGH
Sequences:
>Translated_515_residues MSGMRNDADFAAYLAARWPFLLRSLLLIGCPPGAAEAIAQTGLARCYAAWDEVLETDDVDATVYRVVLDVWHRRKRPPVP PVPPVESGGEPGSQAPPRTEAGSEHQVVDPAELRRRLEARLAELTPGDREAVVLHVVAGLSETQVAEVLDRPVRRISAPA SPEDLRIVTESIEVLAPPFDGVVAEAGVRRRRRRRIVVASVAAAVLVLAAAGWALSRSPAERPADADWVVLPQPNPVDVP WYAGGLLHLSTVAIRMPAVGDLAAVNDGAVFTDAEGTVWFAAGDGAVTEIGRTAPDARVAVSDQTDWAAWVDPSADVPRL VVHNLVSGKDTGLDLPGSGSVLAVDQARVYYTTTEGDFQWEPAGDPMLLDRTGLLDVESASRVYADSRGIEIVQAIFRVA NLRPGIGALLSPGGNFVLSRAGDGSVPFRPLLYDARSGDRMRSGLAAGELALDATFGPNHTVSYLVAPRSEIGAPPAVDG NTEPLVMLRTCDLDPVVCHDVIPLARPGERPLLGH >Mature_514_residues SGMRNDADFAAYLAARWPFLLRSLLLIGCPPGAAEAIAQTGLARCYAAWDEVLETDDVDATVYRVVLDVWHRRKRPPVPP VPPVESGGEPGSQAPPRTEAGSEHQVVDPAELRRRLEARLAELTPGDREAVVLHVVAGLSETQVAEVLDRPVRRISAPAS PEDLRIVTESIEVLAPPFDGVVAEAGVRRRRRRRIVVASVAAAVLVLAAAGWALSRSPAERPADADWVVLPQPNPVDVPW YAGGLLHLSTVAIRMPAVGDLAAVNDGAVFTDAEGTVWFAAGDGAVTEIGRTAPDARVAVSDQTDWAAWVDPSADVPRLV VHNLVSGKDTGLDLPGSGSVLAVDQARVYYTTTEGDFQWEPAGDPMLLDRTGLLDVESASRVYADSRGIEIVQAIFRVAN LRPGIGALLSPGGNFVLSRAGDGSVPFRPLLYDARSGDRMRSGLAAGELALDATFGPNHTVSYLVAPRSEIGAPPAVDGN TEPLVMLRTCDLDPVVCHDVIPLARPGERPLLGH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54779; Mature: 54647
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGMRNDADFAAYLAARWPFLLRSLLLIGCPPGAAEAIAQTGLARCYAAWDEVLETDDVD CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH ATVYRVVLDVWHRRKRPPVPPVPPVESGGEPGSQAPPRTEAGSEHQVVDPAELRRRLEAR HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LAELTPGDREAVVLHVVAGLSETQVAEVLDRPVRRISAPASPEDLRIVTESIEVLAPPFD HHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC GVVAEAGVRRRRRRRIVVASVAAAVLVLAAAGWALSRSPAERPADADWVVLPQPNPVDVP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEEEECCCCCCCCC WYAGGLLHLSTVAIRMPAVGDLAAVNDGAVFTDAEGTVWFAAGDGAVTEIGRTAPDARVA HHCCCHHHHHHHEEECCCCCCEEECCCCCEEECCCCEEEEEECCCHHHHHCCCCCCCEEE VSDQTDWAAWVDPSADVPRLVVHNLVSGKDTGLDLPGSGSVLAVDQARVYYTTTEGDFQW ECCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEEECCCCEEE EPAGDPMLLDRTGLLDVESASRVYADSRGIEIVQAIFRVANLRPGIGALLSPGGNFVLSR CCCCCCEEEECCCCEECCCCHHHHHCCCCHHHHHHHHHHHCCCCCCHHEECCCCCEEEEE AGDGSVPFRPLLYDARSGDRMRSGLAAGELALDATFGPNHTVSYLVAPRSEIGAPPAVDG CCCCCCCCCCEEEECCCCHHHHHCCCCCCEEEEECCCCCCEEEEEEECHHHCCCCCCCCC NTEPLVMLRTCDLDPVVCHDVIPLARPGERPLLGH CCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure SGMRNDADFAAYLAARWPFLLRSLLLIGCPPGAAEAIAQTGLARCYAAWDEVLETDDVD CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH ATVYRVVLDVWHRRKRPPVPPVPPVESGGEPGSQAPPRTEAGSEHQVVDPAELRRRLEAR HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LAELTPGDREAVVLHVVAGLSETQVAEVLDRPVRRISAPASPEDLRIVTESIEVLAPPFD HHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC GVVAEAGVRRRRRRRIVVASVAAAVLVLAAAGWALSRSPAERPADADWVVLPQPNPVDVP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCEEEECCCCCCCCC WYAGGLLHLSTVAIRMPAVGDLAAVNDGAVFTDAEGTVWFAAGDGAVTEIGRTAPDARVA HHCCCHHHHHHHEEECCCCCCEEECCCCCEEECCCCEEEEEECCCHHHHHCCCCCCCEEE VSDQTDWAAWVDPSADVPRLVVHNLVSGKDTGLDLPGSGSVLAVDQARVYYTTTEGDFQW ECCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCEEEEEECCCCEEE EPAGDPMLLDRTGLLDVESASRVYADSRGIEIVQAIFRVANLRPGIGALLSPGGNFVLSR CCCCCCEEEECCCCEECCCCHHHHHCCCCHHHHHHHHHHHCCCCCCHHEECCCCCEEEEE AGDGSVPFRPLLYDARSGDRMRSGLAAGELALDATFGPNHTVSYLVAPRSEIGAPPAVDG CCCCCCCCCCEEEECCCCHHHHHCCCCCCEEEEECCCCCCEEEEEEECHHHCCCCCCCCC NTEPLVMLRTCDLDPVVCHDVIPLARPGERPLLGH CCCCEEEEEECCCCCCHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA