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The map label for this gene is yddE [C]

Identifier: 119716537

GI number: 119716537

Start: 2460477

End: 2461298

Strand: Direct

Name: yddE [C]

Synonym: Noca_2310

Alternate gene names: 119716537

Gene position: 2460477-2461298 (Clockwise)

Preceding gene: 119716536

Following gene: 119716538

Centisome position: 49.35

GC content: 75.06

Gene sequence:

>822_bases
ATGCGCTTCAGCCAGGTCGACGTCTTCTCCAGCCAGCCGCTGCGCGGCAACCCGGTCGCAGTCGTGCACGACGCCGACGG
GGTGACCGACGAGCAGATGGCGGCGTTCGCGCGGTGGACGAACCTCTCCGAGACGACCTTCCTGCTCGCGCCGACCCAGG
CCGGGGCGGACTACCGCCTGCGGATCTGGACGCCGGGCGGGGAGCTGCCGTTCGCCGGCCACCCCACGCTGGGCAGCGCG
CACGCCTGGCTCGAGGCCGGCGGCGTCCCCGCCACCGACGGCGAGCTCGTCCAGGAGTGTGGCGCCGGGCTGGTGCGGCT
CCGGCGGGGCACCACCCTCGCCTTCGCGGCACCGCCCCTCATCCGCTCCGGCCCGGTCGACGACGCCGATCTGGACGCGA
TCGTCCGTGCGCTGAGGGTGCGCCGCGACGACCTCCTCGAGGCCGCCTGGATCGACAACGGGCCGGGCTGGGTCGGCGTC
CTGCTCGCGGACGCGGAGACCGTGCTCGGGCTGCGGCCCGACTGGGCGGCGTTCGGCGACCGCCAGATCGGTGTCGTGGG
CCGCCACGCAGCGGACGGTCCGGCCGACGTCGAGGTGCGGGCGTTCTGCCCGGACCTCGGCATTCCGGAGGACCCGGTGA
CCGGCTCGCTCAACGCCGGGATCGGCCAGTGGCTGGCGGGCAGCCGCCTGCCCTCGGCGTACGTCGCGTCCCAGGGGACC
GCGCTGCTGCGTGCCGGGCGGGTGCACGTGGTGAAGGAGGGGCAGACGGTGTGGGTCGGCGGCGACACCCGGACGACGAT
CAGCGGCTCCGTGGATCTCTGA

Upstream 100 bases:

>100_bases
CGACCTGGACCCCGTGGTGTGCCACGACGTGATCCCGCTGGCGCGCCCGGGTGAGCGGCCGCTGCTGGGCCACTGAGCGG
GTCGCTGCCAGACTCCCGGC

Downstream 100 bases:

>100_bases
CGGCTACGCTCGCAACGTGCGGGCCTACCTCGACCTCCTCCAGCGCGTCGTCGACGAAGGCGTCCCCAAGGGCGACCGCA
CCGGCACCGGGACGCTGAGC

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRFSQVDVFSSQPLRGNPVAVVHDADGVTDEQMAAFARWTNLSETTFLLAPTQAGADYRLRIWTPGGELPFAGHPTLGSA
HAWLEAGGVPATDGELVQECGAGLVRLRRGTTLAFAAPPLIRSGPVDDADLDAIVRALRVRRDDLLEAAWIDNGPGWVGV
LLADAETVLGLRPDWAAFGDRQIGVVGRHAADGPADVEVRAFCPDLGIPEDPVTGSLNAGIGQWLAGSRLPSAYVASQGT
ALLRAGRVHVVKEGQTVWVGGDTRTTISGSVDL

Sequences:

>Translated_273_residues
MRFSQVDVFSSQPLRGNPVAVVHDADGVTDEQMAAFARWTNLSETTFLLAPTQAGADYRLRIWTPGGELPFAGHPTLGSA
HAWLEAGGVPATDGELVQECGAGLVRLRRGTTLAFAAPPLIRSGPVDDADLDAIVRALRVRRDDLLEAAWIDNGPGWVGV
LLADAETVLGLRPDWAAFGDRQIGVVGRHAADGPADVEVRAFCPDLGIPEDPVTGSLNAGIGQWLAGSRLPSAYVASQGT
ALLRAGRVHVVKEGQTVWVGGDTRTTISGSVDL
>Mature_273_residues
MRFSQVDVFSSQPLRGNPVAVVHDADGVTDEQMAAFARWTNLSETTFLLAPTQAGADYRLRIWTPGGELPFAGHPTLGSA
HAWLEAGGVPATDGELVQECGAGLVRLRRGTTLAFAAPPLIRSGPVDDADLDAIVRALRVRRDDLLEAAWIDNGPGWVGV
LLADAETVLGLRPDWAAFGDRQIGVVGRHAADGPADVEVRAFCPDLGIPEDPVTGSLNAGIGQWLAGSRLPSAYVASQGT
ALLRAGRVHVVKEGQTVWVGGDTRTTISGSVDL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=285, Percent_Identity=30.5263157894737, Blast_Score=92, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6321818, Length=291, Percent_Identity=33.3333333333333, Blast_Score=157, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28743; Mature: 28743

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSQVDVFSSQPLRGNPVAVVHDADGVTDEQMAAFARWTNLSETTFLLAPTQAGADYRL
CCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEE
RIWTPGGELPFAGHPTLGSAHAWLEAGGVPATDGELVQECGAGLVRLRRGTTLAFAAPPL
EEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCEEEEECCCC
IRSGPVDDADLDAIVRALRVRRDDLLEAAWIDNGPGWVGVLLADAETVLGLRPDWAAFGD
CCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEECCHHHCCCCCCHHHCCC
RQIGVVGRHAADGPADVEVRAFCPDLGIPEDPVTGSLNAGIGQWLAGSRLPSAYVASQGT
CEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCC
ALLRAGRVHVVKEGQTVWVGGDTRTTISGSVDL
EEEECCEEEEEECCCEEEECCCCCEEECCCCCC
>Mature Secondary Structure
MRFSQVDVFSSQPLRGNPVAVVHDADGVTDEQMAAFARWTNLSETTFLLAPTQAGADYRL
CCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCEEE
RIWTPGGELPFAGHPTLGSAHAWLEAGGVPATDGELVQECGAGLVRLRRGTTLAFAAPPL
EEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHCCCEEEEECCCEEEEECCCC
IRSGPVDDADLDAIVRALRVRRDDLLEAAWIDNGPGWVGVLLADAETVLGLRPDWAAFGD
CCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEEEECCHHHCCCCCCHHHCCC
RQIGVVGRHAADGPADVEVRAFCPDLGIPEDPVTGSLNAGIGQWLAGSRLPSAYVASQGT
CEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCC
ALLRAGRVHVVKEGQTVWVGGDTRTTISGSVDL
EEEECCEEEEEECCCEEEECCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]