| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716488
Identifier: 119716488
GI number: 119716488
Start: 2412840
End: 2413304
Strand: Direct
Name: 119716488
Synonym: Noca_2261
Alternate gene names: NA
Gene position: 2412840-2413304 (Clockwise)
Preceding gene: 119716487
Following gene: 119716489
Centisome position: 48.39
GC content: 67.74
Gene sequence:
>465_bases GTGTCCAGATCACCCTGCCGCGCTCGACGCGGCTCGACCCACCCAGCAGTCCTGGCCACCCTCGCCGCAGTCCTGGCGTC CGCACTGTGCCTGTCCGCCACTTCGCCGGCGGCCGCGGCTGAGCCCGTCGAGGACATGGGCTGCCGGATGGTCATCTGGG CCTCCGACAGCGTCTTCGACACCTCCTACGCCCACGACGGCATGCGGCACGCCTTTCGCGGCTGCCTGGTCAAGCGCAGC TGGTCCACGAAGTCCTACCGCTCCCTCATGAACCGGCAGTGGCGGCTGCACAACCACCTGGCCAGCTCGGAGTGCCGGGT CGGCGACTACCACTCTCCGGCCTCAGGCGAACCACCTACAAGGGCATCCGCGTCGTCGTCTTCAAGTACCGCTTCGACTA CCTGGTGCCCTGCTGAGCAGTCCCACGCGAGCACGAGCGGATCCGAACAAGTTCGGCCGATGTGA
Upstream 100 bases:
>100_bases GGGGCGCTTCTTTGCGCCCTCGTTGATCGCCCCGGACCCCTTCGCGGACCTAGGTGACTGCGGGGCCGGCCTGCGTCCCG CCCGAACCGAGGAGGAACGC
Downstream 100 bases:
>100_bases TCGCTGCCGGACCCCGATGGGACCTAGGTGACTGCGGGACCGATCCGAACGTCTCGCAGTCACCTAGGAGGAAGTCATGT CCACCACCGTCACCTTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 154; Mature: 153
Protein sequence:
>154_residues MSRSPCRARRGSTHPAVLATLAAVLASALCLSATSPAAAAEPVEDMGCRMVIWASDSVFDTSYAHDGMRHAFRGCLVKRS WSTKSYRSLMNRQWRLHNHLASSECRVGDYHSPASGEPPTRASASSSSSTASTTWCPAEQSHASTSGSEQVRPM
Sequences:
>Translated_154_residues MSRSPCRARRGSTHPAVLATLAAVLASALCLSATSPAAAAEPVEDMGCRMVIWASDSVFDTSYAHDGMRHAFRGCLVKRS WSTKSYRSLMNRQWRLHNHLASSECRVGDYHSPASGEPPTRASASSSSSTASTTWCPAEQSHASTSGSEQVRPM >Mature_153_residues SRSPCRARRGSTHPAVLATLAAVLASALCLSATSPAAAAEPVEDMGCRMVIWASDSVFDTSYAHDGMRHAFRGCLVKRSW STKSYRSLMNRQWRLHNHLASSECRVGDYHSPASGEPPTRASASSSSSTASTTWCPAEQSHASTSGSEQVRPM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16530; Mature: 16398
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 7.8 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSPCRARRGSTHPAVLATLAAVLASALCLSATSPAAAAEPVEDMGCRMVIWASDSVFD CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCCCC TSYAHDGMRHAFRGCLVKRSWSTKSYRSLMNRQWRLHNHLASSECRVGDYHSPASGEPPT CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC RASASSSSSTASTTWCPAEQSHASTSGSEQVRPM CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SRSPCRARRGSTHPAVLATLAAVLASALCLSATSPAAAAEPVEDMGCRMVIWASDSVFD CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCEEEEEECCCCCC TSYAHDGMRHAFRGCLVKRSWSTKSYRSLMNRQWRLHNHLASSECRVGDYHSPASGEPPT CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC RASASSSSSTASTTWCPAEQSHASTSGSEQVRPM CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA