| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716489
Identifier: 119716489
GI number: 119716489
Start: 2413381
End: 2413770
Strand: Direct
Name: 119716489
Synonym: Noca_2262
Alternate gene names: NA
Gene position: 2413381-2413770 (Clockwise)
Preceding gene: 119716488
Following gene: 119716493
Centisome position: 48.4
GC content: 67.95
Gene sequence:
>390_bases ATGTCCACCACCGTCACCTTCGCCGGCAACCTGGCCGAGGCTCCCGAGCTGCTCTCCACCCGCGAGAACAAGCCGTTCGT CAGCTGTCGGGTCCTGGTCAACCGGCGCGTACAGAACGACGACGGGGAGTGGGTCAACGACGAGCCCACTGCCCACAACG TCAAGATCTTCGGCTCGGCCGCCACGCACGTGCACGACAGCTGCGGATCCGGCGACCCGATCTTCGTCCACGGCCTCGAG CGCACCGAGAGCTGGCCGGACAAGGAGACCGGCGAGAAGCGCACCAAGGACGTCGTGGTCGTCGACAATCGCTTCGGCGA GGTCGGCGTCTCGCTCAAGTACGTCTCCGCGCGCATCGAGCGCGCCGCCCGCCCGGCTCAGGCCAGCTGA
Upstream 100 bases:
>100_bases TCCGAACAAGTTCGGCCGATGTGATCGCTGCCGGACCCCGATGGGACCTAGGTGACTGCGGGACCGATCCGAACGTCTCG CAGTCACCTAGGAGGAAGTC
Downstream 100 bases:
>100_bases CCGCGCGGAGGTTCCGATGGATCTCGTCGTACAGTCCCCGGACGAGCTGCTCGCCGCAGTGCCGCACGTCCTCGGCTTCA AGCTTTTCTGGACTAGCGAC
Product: single-strand binding protein/primosomal replication protein n
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MSTTVTFAGNLAEAPELLSTRENKPFVSCRVLVNRRVQNDDGEWVNDEPTAHNVKIFGSAATHVHDSCGSGDPIFVHGLE RTESWPDKETGEKRTKDVVVVDNRFGEVGVSLKYVSARIERAARPAQAS
Sequences:
>Translated_129_residues MSTTVTFAGNLAEAPELLSTRENKPFVSCRVLVNRRVQNDDGEWVNDEPTAHNVKIFGSAATHVHDSCGSGDPIFVHGLE RTESWPDKETGEKRTKDVVVVDNRFGEVGVSLKYVSARIERAARPAQAS >Mature_128_residues STTVTFAGNLAEAPELLSTRENKPFVSCRVLVNRRVQNDDGEWVNDEPTAHNVKIFGSAATHVHDSCGSGDPIFVHGLER TESWPDKETGEKRTKDVVVVDNRFGEVGVSLKYVSARIERAARPAQAS
Specific function: Unknown
COG id: COG0629
COG function: function code L; Single-stranded DNA-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14166; Mature: 14035
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: PS50935 SSB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTVTFAGNLAEAPELLSTRENKPFVSCRVLVNRRVQNDDGEWVNDEPTAHNVKIFGSA CCCEEEECCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC ATHVHDSCGSGDPIFVHGLERTESWPDKETGEKRTKDVVVVDNRFGEVGVSLKYVSARIE CCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHH RAARPAQAS HHCCCCCCC >Mature Secondary Structure STTVTFAGNLAEAPELLSTRENKPFVSCRVLVNRRVQNDDGEWVNDEPTAHNVKIFGSA CCEEEECCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC ATHVHDSCGSGDPIFVHGLERTESWPDKETGEKRTKDVVVVDNRFGEVGVSLKYVSARIE CCEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHH RAARPAQAS HHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA