| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716452
Identifier: 119716452
GI number: 119716452
Start: 2371632
End: 2372543
Strand: Direct
Name: 119716452
Synonym: Noca_2224
Alternate gene names: NA
Gene position: 2371632-2372543 (Clockwise)
Preceding gene: 119716451
Following gene: 119716453
Centisome position: 47.57
GC content: 69.19
Gene sequence:
>912_bases ATGACCGGCTTGCAGATCGCGCTCGCCAGCGGCACCCTCATCGGACTGGCCCTCGCCCTGCTCGTATGGCGCATCGCGCC CTCCGACCCCGACCTGGTCGACGCGCTGGACCGTCTCTCACCTGACCACGTCGTGCCCCGCCGCAACACTCCCGGCCTCG ACGTCGACACCGGCACCGGCTCGGCGGTCGATCGGATCGGCTTGTGGGCGATGAAGAACCTGCCCGGCGGCGCCTGGGCC CACACGCCTCGCAAGGACCTGGCCATCCTGCAGATCAGCGAGACCCGGTTCTACGGCGAGAAGGTCGTCTGGGCTGCGCT CGGCCTGATCATGCCGCCGCTGCTGGCCGCCTTCTTCACTCTGATCGGCCTTCCGCTGCCGTTCGCCATTCCGACGCTCG GCTCGCTGGCCCTGGCAGCCCTGTTCTGGTTCATGCCCAACTACAACGCCGCCGACGATGCCAAGAAGGCCCGCATCGAG TTCAGCCGCGCCCTGGGCGCCTACATCGACATGGTGGCCACCGGCGTCCGCGACGGATCCAGCGGCCAGCAGGCGCTGCG CTCGGCAGCCGAGGTCGGCGACAAGTGGGTCTTCAAGCGGATCGAGAGCGAGCTGCGCCGCGCCCGCTACATGACCCGCG CACCCTGGGACTCCCTGCACGGTCTCGCCGACGAGCTCGCCGTCCCCGAGCTCGATGACCTCGCCGACATCATGCAGCAG TCCGGCCAGGACGGAGCCCAGATCTACAACAACCTCCGGGCCCGCGCCGCCGCACTCCGCTCGGCGATGCTCAGCGCCGA GGTCGGCAAGGCCAACGCCACCTCCGAGCGCATGTACATCCCAGCCAGCCTGCTCGGCATCGTCTTCATGGCGATCCTCG TCACCCCCTCCCTGCTCCGCTTCACCACCTGA
Upstream 100 bases:
>100_bases CTGTCGCCAAGCCGCTCCCGCGGTTCCTCGACCTCCAGGCCCGCAACGCCCACCGCGCCGCCCAGCGCACGGCACCGGGC GAGAAGGAAGGAGCGCTCGC
Downstream 100 bases:
>100_bases CCGACCTAACACCGACCCCAAAGAACCAGGGTCACCCAGACCGCCAACCGAACAACCAGGAAGGAAGAACCCCGATGTTG AAGCTCTTCATCGCCCTCCA
Product: type II secretion system protein
Products: NA
Alternate protein names: Integral Membrane Protein; Type II Secretion System F Domain-Containing Protein; Membrane Associated Protein
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MTGLQIALASGTLIGLALALLVWRIAPSDPDLVDALDRLSPDHVVPRRNTPGLDVDTGTGSAVDRIGLWAMKNLPGGAWA HTPRKDLAILQISETRFYGEKVVWAALGLIMPPLLAAFFTLIGLPLPFAIPTLGSLALAALFWFMPNYNAADDAKKARIE FSRALGAYIDMVATGVRDGSSGQQALRSAAEVGDKWVFKRIESELRRARYMTRAPWDSLHGLADELAVPELDDLADIMQQ SGQDGAQIYNNLRARAAALRSAMLSAEVGKANATSERMYIPASLLGIVFMAILVTPSLLRFTT
Sequences:
>Translated_303_residues MTGLQIALASGTLIGLALALLVWRIAPSDPDLVDALDRLSPDHVVPRRNTPGLDVDTGTGSAVDRIGLWAMKNLPGGAWA HTPRKDLAILQISETRFYGEKVVWAALGLIMPPLLAAFFTLIGLPLPFAIPTLGSLALAALFWFMPNYNAADDAKKARIE FSRALGAYIDMVATGVRDGSSGQQALRSAAEVGDKWVFKRIESELRRARYMTRAPWDSLHGLADELAVPELDDLADIMQQ SGQDGAQIYNNLRARAAALRSAMLSAEVGKANATSERMYIPASLLGIVFMAILVTPSLLRFTT >Mature_302_residues TGLQIALASGTLIGLALALLVWRIAPSDPDLVDALDRLSPDHVVPRRNTPGLDVDTGTGSAVDRIGLWAMKNLPGGAWAH TPRKDLAILQISETRFYGEKVVWAALGLIMPPLLAAFFTLIGLPLPFAIPTLGSLALAALFWFMPNYNAADDAKKARIEF SRALGAYIDMVATGVRDGSSGQQALRSAAEVGDKWVFKRIESELRRARYMTRAPWDSLHGLADELAVPELDDLADIMQQS GQDGAQIYNNLRARAAALRSAMLSAEVGKANATSERMYIPASLLGIVFMAILVTPSLLRFTT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32726; Mature: 32595
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLQIALASGTLIGLALALLVWRIAPSDPDLVDALDRLSPDHVVPRRNTPGLDVDTGTG CCCCEEEHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SAVDRIGLWAMKNLPGGAWAHTPRKDLAILQISETRFYGEKVVWAALGLIMPPLLAAFFT HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGLPLPFAIPTLGSLALAALFWFMPNYNAADDAKKARIEFSRALGAYIDMVATGVRDGS HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGQQALRSAAEVGDKWVFKRIESELRRARYMTRAPWDSLHGLADELAVPELDDLADIMQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH SGQDGAQIYNNLRARAAALRSAMLSAEVGKANATSERMYIPASLLGIVFMAILVTPSLLR CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHH FTT HCC >Mature Secondary Structure TGLQIALASGTLIGLALALLVWRIAPSDPDLVDALDRLSPDHVVPRRNTPGLDVDTGTG CCCEEEHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC SAVDRIGLWAMKNLPGGAWAHTPRKDLAILQISETRFYGEKVVWAALGLIMPPLLAAFFT HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGLPLPFAIPTLGSLALAALFWFMPNYNAADDAKKARIEFSRALGAYIDMVATGVRDGS HHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGQQALRSAAEVGDKWVFKRIESELRRARYMTRAPWDSLHGLADELAVPELDDLADIMQQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH SGQDGAQIYNNLRARAAALRSAMLSAEVGKANATSERMYIPASLLGIVFMAILVTPSLLR CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHH FTT HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA