| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716451
Identifier: 119716451
GI number: 119716451
Start: 2370703
End: 2371635
Strand: Direct
Name: 119716451
Synonym: Noca_2223
Alternate gene names: NA
Gene position: 2370703-2371635 (Clockwise)
Preceding gene: 119716450
Following gene: 119716452
Centisome position: 47.55
GC content: 71.6
Gene sequence:
>933_bases ATGAGCACTGCGTTCCTGCCCGCCGTCTTCGGTGCGCTCATCGTCATCGGTCTGATCGGGATGGTCTACGCGCTAATCCC CGCGCCGCCGGAGCCGCCGCGGCCCGCCCGGACCGTCACCCCGTTCGGGCGGCTGGGGAACTGGTTCGTCCGGCTCGACC GGCGCACCCGGATGCTGATGGTCGGCGGTGCCATGGCTGGCCTCCTGGTCGCGCTGGTGACCGGCTGGGTGATCGCGATC GTGCTCGTCCCGGCCGGGATCGTCGGTATCCCGCTGTTGCTGACGCCCCCGCCGGCGGCCGCGAGCATCGAGAAGCTCGA GGCGCTCGAGGAGTGGACGCGGTCCCTGTCGGGCAAGCTGACCGCCGGCCAGTCCCTGCGCTCGGCGCTCATTAAGTCCC TGCAGTCCGCGCCGGCGCCGATCGAGCGCGAGGTCGGACTGATGGTCTCCCGGTTGTGGAACAACACCGCCAGCACCGAG GACGTGCTGCGCGCCTTCGCCGAGGACCTCAACGACTCCACCGGCGACGTCGTCGCCAGCCAGCTGATCCTTGCCGCCAG CGGCCGCGGCCAGGCCGGACTGTCGAAGGCCTTGGACGCCCTCGCTGAGACCGTCGCCTCCGACGTGCGCGCTCGCCGCC AGATTGCCGCCGACCAGGCCAAGCCCCGCACCACCGCCCGCACCGTCACCGTGATCACCCTCGGTGTGCTGGGCATGCTC GCCTTCACCGGGGACTACATCGAGCCCTACGGGTCCCCGCTGGGCCAGGTCATCCTCGCCGTCCTGCTCTCGGCCTACGT GGCCACGCTGCTGTGGATGCGCCGGATGGCTGTCGCCAAGCCGCTCCCGCGGTTCCTCGACCTCCAGGCCCGCAACGCCC ACCGCGCCGCCCAGCGCACGGCACCGGGCGAGAAGGAAGGAGCGCTCGCATGA
Upstream 100 bases:
>100_bases GCAAGCTCGACAACTTCCTCGCCCAGGAGCTGGCGCGGCATGGGTTCGACCTCGAGGCGTACAAGGCCGAGTCCCAGGCC AACCCGGGGGTGGCCACCTC
Downstream 100 bases:
>100_bases CCGGCTTGCAGATCGCGCTCGCCAGCGGCACCCTCATCGGACTGGCCCTCGCCCTGCTCGTATGGCGCATCGCGCCCTCC GACCCCGACCTGGTCGACGC
Product: type II secretion system protein
Products: NA
Alternate protein names: Type II Secretion System Protein; Type II Secretion System F Domain-Containing Protein; Type II Secretion System F Domain Protein; TadB-Like Protein; Membrane Spanning Protein
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MSTAFLPAVFGALIVIGLIGMVYALIPAPPEPPRPARTVTPFGRLGNWFVRLDRRTRMLMVGGAMAGLLVALVTGWVIAI VLVPAGIVGIPLLLTPPPAAASIEKLEALEEWTRSLSGKLTAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTE DVLRAFAEDLNDSTGDVVASQLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTTARTVTVITLGVLGML AFTGDYIEPYGSPLGQVILAVLLSAYVATLLWMRRMAVAKPLPRFLDLQARNAHRAAQRTAPGEKEGALA
Sequences:
>Translated_310_residues MSTAFLPAVFGALIVIGLIGMVYALIPAPPEPPRPARTVTPFGRLGNWFVRLDRRTRMLMVGGAMAGLLVALVTGWVIAI VLVPAGIVGIPLLLTPPPAAASIEKLEALEEWTRSLSGKLTAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTE DVLRAFAEDLNDSTGDVVASQLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTTARTVTVITLGVLGML AFTGDYIEPYGSPLGQVILAVLLSAYVATLLWMRRMAVAKPLPRFLDLQARNAHRAAQRTAPGEKEGALA >Mature_309_residues STAFLPAVFGALIVIGLIGMVYALIPAPPEPPRPARTVTPFGRLGNWFVRLDRRTRMLMVGGAMAGLLVALVTGWVIAIV LVPAGIVGIPLLLTPPPAAASIEKLEALEEWTRSLSGKLTAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTED VLRAFAEDLNDSTGDVVASQLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTTARTVTVITLGVLGMLA FTGDYIEPYGSPLGQVILAVLLSAYVATLLWMRRMAVAKPLPRFLDLQARNAHRAAQRTAPGEKEGALA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32783; Mature: 32652
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTAFLPAVFGALIVIGLIGMVYALIPAPPEPPRPARTVTPFGRLGNWFVRLDRRTRMLM CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEECCHHHHHH VGGAMAGLLVALVTGWVIAIVLVPAGIVGIPLLLTPPPAAASIEKLEALEEWTRSLSGKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCC TAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTEDVLRAFAEDLNDSTGDVVAS CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH QLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTTARTVTVITLGVLGML HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH AFTGDYIEPYGSPLGQVILAVLLSAYVATLLWMRRMAVAKPLPRFLDLQARNAHRAAQRT HHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC APGEKEGALA CCCCCCCCCC >Mature Secondary Structure STAFLPAVFGALIVIGLIGMVYALIPAPPEPPRPARTVTPFGRLGNWFVRLDRRTRMLM CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEECCHHHHHH VGGAMAGLLVALVTGWVIAIVLVPAGIVGIPLLLTPPPAAASIEKLEALEEWTRSLSGKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCC TAGQSLRSALIKSLQSAPAPIEREVGLMVSRLWNNTASTEDVLRAFAEDLNDSTGDVVAS CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH QLILAASGRGQAGLSKALDALAETVASDVRARRQIAADQAKPRTTARTVTVITLGVLGML HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH AFTGDYIEPYGSPLGQVILAVLLSAYVATLLWMRRMAVAKPLPRFLDLQARNAHRAAQRT HHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC APGEKEGALA CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA