| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119716417
Identifier: 119716417
GI number: 119716417
Start: 2339053
End: 2339835
Strand: Direct
Name: 119716417
Synonym: Noca_2187
Alternate gene names: NA
Gene position: 2339053-2339835 (Clockwise)
Preceding gene: 119716409
Following gene: 119716418
Centisome position: 46.91
GC content: 69.99
Gene sequence:
>783_bases ATGAATCCCACCGCACGCGACTCCTCGGCAGCCGCGCACCTCACCGCGTTGGGCTCGTCCGTGCGACAGCTCCGCGCCGT CGTCGAGCCGCTGGGGGGCGACGACCTGACCAGCGGTGCCTACACCAGCGAGTGGAGCGTCGCGGACGTGCTGTCACACC TCGGCTCCGGGGCAGTCATCAGCATGCGCCGCCTCGAGGACACGCTCGCCGGTCGGCCGACACCGGACGACCACGCCCCA GGAGTGTGGGAGGAGTGGAACGCCAAGACGCCGATGCAGCAGCGGAGCGACGCGCTGGAGGCGGACACTCGGCTCCTGAC CAGTCTGAAGCAGGTGCCGCTGGATTCCCTTGATGAGCTCTCGTTCCCGATGGGCCCGATGACGTTGACGTTCACCGACT TCGTCGCGATGCGCCTCAACGAGCACGTCTTCCACACCTGGGACATCGCGGTCGTGACCGAGCCGTCGGCGACCCTGCTT CCGGACGGCGCAGCGCTGGTGGTGGACAACCTCGGCCTTGTCGCGCGCTTCACCGCGCGGCCCACCGGCGACACCTGCAC CATCACCGTGCGCACGTCCGCGCCCACGCGCACGTTCTCGGTGGACCTGACCCCGGATGCCGCTGCCCTGCGCACGGTTG ACCCCGAGGTTGAAGCCGAGGTGGAGCTGCCGGCAGAGGCCTTCGCACGTCTCGTCTACGGCCGCCTGGACCCCGACCAC ACGCCGCCTGGCCAGCACGGCGACGCGCTCGACCAGCTGCGGCACGTGTTTCCGGGCCCATGA
Upstream 100 bases:
>100_bases TGGGGACTATTCCCCACTTTTGTCGTAGAGTTCCGTCCATGACCCACCACGTTGCTCGTCCTGCACCGTTCGACCTCGAC GACCCGAACGGTGGCCGGCG
Downstream 100 bases:
>100_bases CGCCCCGCGGCTGGAATCGGTGGTCGGGCCCCGGCCCGCGGGGCGCGAACGCCGCTCCTGGCAGGAGCGAACGACCGTGG ACACGACTCGGCATCATCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MNPTARDSSAAAHLTALGSSVRQLRAVVEPLGGDDLTSGAYTSEWSVADVLSHLGSGAVISMRRLEDTLAGRPTPDDHAP GVWEEWNAKTPMQQRSDALEADTRLLTSLKQVPLDSLDELSFPMGPMTLTFTDFVAMRLNEHVFHTWDIAVVTEPSATLL PDGAALVVDNLGLVARFTARPTGDTCTITVRTSAPTRTFSVDLTPDAAALRTVDPEVEAEVELPAEAFARLVYGRLDPDH TPPGQHGDALDQLRHVFPGP
Sequences:
>Translated_260_residues MNPTARDSSAAAHLTALGSSVRQLRAVVEPLGGDDLTSGAYTSEWSVADVLSHLGSGAVISMRRLEDTLAGRPTPDDHAP GVWEEWNAKTPMQQRSDALEADTRLLTSLKQVPLDSLDELSFPMGPMTLTFTDFVAMRLNEHVFHTWDIAVVTEPSATLL PDGAALVVDNLGLVARFTARPTGDTCTITVRTSAPTRTFSVDLTPDAAALRTVDPEVEAEVELPAEAFARLVYGRLDPDH TPPGQHGDALDQLRHVFPGP >Mature_260_residues MNPTARDSSAAAHLTALGSSVRQLRAVVEPLGGDDLTSGAYTSEWSVADVLSHLGSGAVISMRRLEDTLAGRPTPDDHAP GVWEEWNAKTPMQQRSDALEADTRLLTSLKQVPLDSLDELSFPMGPMTLTFTDFVAMRLNEHVFHTWDIAVVTEPSATLL PDGAALVVDNLGLVARFTARPTGDTCTITVRTSAPTRTFSVDLTPDAAALRTVDPEVEAEVELPAEAFARLVYGRLDPDH TPPGQHGDALDQLRHVFPGP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27955; Mature: 27955
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPTARDSSAAAHLTALGSSVRQLRAVVEPLGGDDLTSGAYTSEWSVADVLSHLGSGAVI CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEE SMRRLEDTLAGRPTPDDHAPGVWEEWNAKTPMQQRSDALEADTRLLTSLKQVPLDSLDEL EHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHC SFPMGPMTLTFTDFVAMRLNEHVFHTWDIAVVTEPSATLLPDGAALVVDNLGLVARFTAR CCCCCCEEEHHHHHHHHHHCCCEEEEEEEEEEECCCCEECCCCCEEEEECCCEEEEEECC PTGDTCTITVRTSAPTRTFSVDLTPDAAALRTVDPEVEAEVELPAEAFARLVYGRLDPDH CCCCEEEEEEECCCCCEEEEEEECCCHHHHEECCCCCCEEEECCHHHHHHHHHHCCCCCC TPPGQHGDALDQLRHVFPGP CCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure MNPTARDSSAAAHLTALGSSVRQLRAVVEPLGGDDLTSGAYTSEWSVADVLSHLGSGAVI CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEE SMRRLEDTLAGRPTPDDHAPGVWEEWNAKTPMQQRSDALEADTRLLTSLKQVPLDSLDEL EHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHC SFPMGPMTLTFTDFVAMRLNEHVFHTWDIAVVTEPSATLLPDGAALVVDNLGLVARFTAR CCCCCCEEEHHHHHHHHHHCCCEEEEEEEEEEECCCCEECCCCCEEEEECCCEEEEEECC PTGDTCTITVRTSAPTRTFSVDLTPDAAALRTVDPEVEAEVELPAEAFARLVYGRLDPDH CCCCEEEEEEECCCCCEEEEEEECCCHHHHEECCCCCCEEEECCHHHHHHHHHHCCCCCC TPPGQHGDALDQLRHVFPGP CCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA