| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119716418
Identifier: 119716418
GI number: 119716418
Start: 2339832
End: 2340425
Strand: Direct
Name: 119716418
Synonym: Noca_2188
Alternate gene names: NA
Gene position: 2339832-2340425 (Clockwise)
Preceding gene: 119716417
Following gene: 119716423
Centisome position: 46.93
GC content: 72.73
Gene sequence:
>594_bases ATGACGCCCCGCGGCTGGAATCGGTGGTCGGGCCCCGGCCCGCGGGGCGCGAACGCCGCTCCTGGCAGGAGCGAACGACC GTGGACACGACTCGGCATCATCTCGATCGCGGCTCATCTGGGTTATGAGCTCGCTGCCGGCGTGGCGGTGCCGCTCGCGC CCCACGTCGGGGTGCGTGCCGGGGTGGCGGCCTTCGCGGTCCCCGCTGCCGCTGCCTACGCGCCGGCCGGCCGGCTGCCC AGTCCACGCGGGGACCGCACGTACGCCATCGTCAACGGGCTCTTCCTGGCGGCCGTAGTGGCGCACTACACCAGCTGGCC ACGTGTCTGGCGCGCCGGAGTGCCGTGGCTGACCGAGTGCGAAGGGCTCGACGGCCCCGTGATCGGCCCGTACAACGTGA TCCTGCAGGTCTCCGCCGTGGCGGCGGTCGCCGGACTCGTGGAGAACCGGAGTCGGTGGCGCTGGGGAGTCGTCACAGTA CTGATGGCAGCGCCCGTCCTGCGGTGGGCCACGCCTCGGGAGTACGCCAGGCTCTTGCAGCAAGCAGCGGAGCACCCACG GCGGTGGAACCGGCGGCTGGCGGCACAGGCGTAA
Upstream 100 bases:
>100_bases CCTTCGCACGTCTCGTCTACGGCCGCCTGGACCCCGACCACACGCCGCCTGGCCAGCACGGCGACGCGCTCGACCAGCTG CGGCACGTGTTTCCGGGCCC
Downstream 100 bases:
>100_bases GAGCTGCGAGAGTCGCGAGGGTTGCCAGCCCCGCGAAGCCAATGCGAAGGCCCGGGCGGAGCCGGGCCTTCGTGTACGAA CACTCTGAGTTGCGAGTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MTPRGWNRWSGPGPRGANAAPGRSERPWTRLGIISIAAHLGYELAAGVAVPLAPHVGVRAGVAAFAVPAAAAYAPAGRLP SPRGDRTYAIVNGLFLAAVVAHYTSWPRVWRAGVPWLTECEGLDGPVIGPYNVILQVSAVAAVAGLVENRSRWRWGVVTV LMAAPVLRWATPREYARLLQQAAEHPRRWNRRLAAQA
Sequences:
>Translated_197_residues MTPRGWNRWSGPGPRGANAAPGRSERPWTRLGIISIAAHLGYELAAGVAVPLAPHVGVRAGVAAFAVPAAAAYAPAGRLP SPRGDRTYAIVNGLFLAAVVAHYTSWPRVWRAGVPWLTECEGLDGPVIGPYNVILQVSAVAAVAGLVENRSRWRWGVVTV LMAAPVLRWATPREYARLLQQAAEHPRRWNRRLAAQA >Mature_196_residues TPRGWNRWSGPGPRGANAAPGRSERPWTRLGIISIAAHLGYELAAGVAVPLAPHVGVRAGVAAFAVPAAAAYAPAGRLPS PRGDRTYAIVNGLFLAAVVAHYTSWPRVWRAGVPWLTECEGLDGPVIGPYNVILQVSAVAAVAGLVENRSRWRWGVVTVL MAAPVLRWATPREYARLLQQAAEHPRRWNRRLAAQA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21186; Mature: 21054
Theoretical pI: Translated: 11.98; Mature: 11.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPRGWNRWSGPGPRGANAAPGRSERPWTRLGIISIAAHLGYELAAGVAVPLAPHVGVRA CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH GVAAFAVPAAAAYAPAGRLPSPRGDRTYAIVNGLFLAAVVAHYTSWPRVWRAGVPWLTEC HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHC EGLDGPVIGPYNVILQVSAVAAVAGLVENRSRWRWGVVTVLMAAPVLRWATPREYARLLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH QAAEHPRRWNRRLAAQA HHHHHHHHHHHHHHCCC >Mature Secondary Structure TPRGWNRWSGPGPRGANAAPGRSERPWTRLGIISIAAHLGYELAAGVAVPLAPHVGVRA CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH GVAAFAVPAAAAYAPAGRLPSPRGDRTYAIVNGLFLAAVVAHYTSWPRVWRAGVPWLTEC HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHC EGLDGPVIGPYNVILQVSAVAAVAGLVENRSRWRWGVVTVLMAAPVLRWATPREYARLLQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH QAAEHPRRWNRRLAAQA HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA