Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 119716389

GI number: 119716389

Start: 2307387

End: 2308535

Strand: Reverse

Name: yfdE [H]

Synonym: Noca_2158

Alternate gene names: 119716389

Gene position: 2308535-2307387 (Counterclockwise)

Preceding gene: 119716392

Following gene: 119716388

Centisome position: 46.3

GC content: 63.1

Gene sequence:

>1149_bases
ATGACGACGTTGCAAGGCATCACCGTCCTAGAGGTCGGCGGGTTTCTCGCTGCCCCGTGGGCCACGATGCACCTGGCTGA
CTTGGGAGCCAGAGTCATCAAGGTCGAGATGGCCGGTCAAGGCGACTCTGTCCGCCAGACGGCCCCAATCGTCAACGGCG
AGAGCGCGGCTTTCGCCACCATCAATCGCAACAAAGAATCCGTCGTCCTCGATTTGAAGTCCCCCGACGGGATGTCCGCA
TTCTTGGAGCTGGTCCGGAACACTGATGTTCTGGTCGAGAACCTACGACCAGGAGCGATGTCCAAACTGGGATTGGGGTA
CTCAGACCTCGCACCCCGCGCACCATCGTTGATCTATGCCTCGGCGTCCGGGTGGGGACAAGACGGCCCTGACGCCGGAC
TGCCTGGGTTGGACATCATGGCCCAAGCCCGCAGCGGTCTCATGAGCCTCACTGGGTCGATGGGTGGGCCCGCCGTCAAG
GTCGGCGTCCCGGTCTGCGACCTCGTATGTGCACTGTATGTCGCGCTGGCTGTCACAGCCGCGCTCCACGAGCGTCAGCG
GTCCGGACTGGGCCAATTTATCGACGTCTCGCTGCTCGAGTCAGCGGTCTCTCTGGCCGTTTGGGAGGCCCCCCGATACT
TTGTCAACGGCGAAGTTGGCGCGCCTCTAGGGACCGCACACCAAAGCCTCGCCCCATATCAGGCGTTTGGAACCAGCGAC
GGCAAAGTCACTCTTGGCGCGGTCACGACCAAGACGTGGTCGGCACTGTGCGAGGTGCTTGGCCTGCCCGAACTAGAACG
AGACCCGAGGTTCGTCGACGGCGGGACACGATTCCGCCATCGTGCAGAACTGGCCGAAGTTCTCGAGGGGGCGACCCGGG
CCTTCTCCACCTCAGAGCTTCTCGACAAGCTCATCCGTGCACAGGTGCCATGCGCAAGGATCGCTGACATCGAACAGGCC
CTCACAGATCCGCACCTAGCGGAACGCGAGTTCTTTTGGGATTCCTCACATCCGACCATCGGGACCGTGCGACAGACGAG
GTCGCCGATGCGGTTTTCGAGGACGCCGACAGTCGCAGGTCAGGCTGGGCCGCTTCTGGGCCAGCACACCCAGCAAGTCC
TAGCGGAGTTCGGCGCGGGGGAGGCGTGA

Upstream 100 bases:

>100_bases
CAAGGGCCAACTGCGTGCACCTCCTGTGCAGAAACGAACAGGTTGACCCAGCATCTGAGGCTGTGGTCGCCTTGCGCCGC
ACAGACAGGGAGGCGGTTAT

Downstream 100 bases:

>100_bases
TGAGCGAACCCAACATTCAAGTCCACCGGCTCCATGACGTGCTCTACGTCACATTCGACCGGCCAGAAAAGCTGAACGCC
ATGACCTGGGAGATGTACGC

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTTLQGITVLEVGGFLAAPWATMHLADLGARVIKVEMAGQGDSVRQTAPIVNGESAAFATINRNKESVVLDLKSPDGMSA
FLELVRNTDVLVENLRPGAMSKLGLGYSDLAPRAPSLIYASASGWGQDGPDAGLPGLDIMAQARSGLMSLTGSMGGPAVK
VGVPVCDLVCALYVALAVTAALHERQRSGLGQFIDVSLLESAVSLAVWEAPRYFVNGEVGAPLGTAHQSLAPYQAFGTSD
GKVTLGAVTTKTWSALCEVLGLPELERDPRFVDGGTRFRHRAELAEVLEGATRAFSTSELLDKLIRAQVPCARIADIEQA
LTDPHLAEREFFWDSSHPTIGTVRQTRSPMRFSRTPTVAGQAGPLLGQHTQQVLAEFGAGEA

Sequences:

>Translated_382_residues
MTTLQGITVLEVGGFLAAPWATMHLADLGARVIKVEMAGQGDSVRQTAPIVNGESAAFATINRNKESVVLDLKSPDGMSA
FLELVRNTDVLVENLRPGAMSKLGLGYSDLAPRAPSLIYASASGWGQDGPDAGLPGLDIMAQARSGLMSLTGSMGGPAVK
VGVPVCDLVCALYVALAVTAALHERQRSGLGQFIDVSLLESAVSLAVWEAPRYFVNGEVGAPLGTAHQSLAPYQAFGTSD
GKVTLGAVTTKTWSALCEVLGLPELERDPRFVDGGTRFRHRAELAEVLEGATRAFSTSELLDKLIRAQVPCARIADIEQA
LTDPHLAEREFFWDSSHPTIGTVRQTRSPMRFSRTPTVAGQAGPLLGQHTQQVLAEFGAGEA
>Mature_381_residues
TTLQGITVLEVGGFLAAPWATMHLADLGARVIKVEMAGQGDSVRQTAPIVNGESAAFATINRNKESVVLDLKSPDGMSAF
LELVRNTDVLVENLRPGAMSKLGLGYSDLAPRAPSLIYASASGWGQDGPDAGLPGLDIMAQARSGLMSLTGSMGGPAVKV
GVPVCDLVCALYVALAVTAALHERQRSGLGQFIDVSLLESAVSLAVWEAPRYFVNGEVGAPLGTAHQSLAPYQAFGTSDG
KVTLGAVTTKTWSALCEVLGLPELERDPRFVDGGTRFRHRAELAEVLEGATRAFSTSELLDKLIRAQVPCARIADIEQAL
TDPHLAEREFFWDSSHPTIGTVRQTRSPMRFSRTPTVAGQAGPLLGQHTQQVLAEFGAGEA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=374, Percent_Identity=37.4331550802139, Blast_Score=259, Evalue=2e-69,
Organism=Homo sapiens, GI300863124, Length=400, Percent_Identity=35.5, Blast_Score=246, Evalue=2e-65,
Organism=Homo sapiens, GI300863126, Length=374, Percent_Identity=32.8877005347594, Blast_Score=209, Evalue=4e-54,
Organism=Homo sapiens, GI13376042, Length=400, Percent_Identity=31.25, Blast_Score=197, Evalue=1e-50,
Organism=Homo sapiens, GI42794625, Length=387, Percent_Identity=30.4909560723514, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI266456254, Length=387, Percent_Identity=30.4909560723514, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI266458393, Length=270, Percent_Identity=34.8148148148148, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI266458397, Length=267, Percent_Identity=34.4569288389513, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=41.2587412587413, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=41.2587412587413, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=378, Percent_Identity=34.1269841269841, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1788717, Length=405, Percent_Identity=27.9012345679012, Blast_Score=154, Evalue=7e-39,
Organism=Escherichia coli, GI1786222, Length=390, Percent_Identity=24.3589743589744, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=337, Percent_Identity=27.299703264095, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32564160, Length=346, Percent_Identity=25.4335260115607, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=377, Percent_Identity=38.1962864721485, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI24585488, Length=269, Percent_Identity=35.3159851301115, Blast_Score=120, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40360; Mature: 40229

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLQGITVLEVGGFLAAPWATMHLADLGARVIKVEMAGQGDSVRQTAPIVNGESAAFAT
CCCCCCEEEEEECCCHHCCHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCCCCCEEEE
INRNKESVVLDLKSPDGMSAFLELVRNTDVLVENLRPGAMSKLGLGYSDLAPRAPSLIYA
EECCCCEEEEEECCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHCCCHHHCCCCCCCEEEE
SASGWGQDGPDAGLPGLDIMAQARSGLMSLTGSMGGPAVKVGVPVCDLVCALYVALAVTA
ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH
ALHERQRSGLGQFIDVSLLESAVSLAVWEAPRYFVNGEVGAPLGTAHQSLAPYQAFGTSD
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCHHHCCCCC
GKVTLGAVTTKTWSALCEVLGLPELERDPRFVDGGTRFRHRAELAEVLEGATRAFSTSEL
CCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCHHHH
LDKLIRAQVPCARIADIEQALTDPHLAEREFFWDSSHPTIGTVRQTRSPMRFSRTPTVAG
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
QAGPLLGQHTQQVLAEFGAGEA
CCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTLQGITVLEVGGFLAAPWATMHLADLGARVIKVEMAGQGDSVRQTAPIVNGESAAFAT
CCCCCEEEEEECCCHHCCHHHHHHHHCCCEEEEEEECCCCCCCHHHCCCCCCCCCEEEE
INRNKESVVLDLKSPDGMSAFLELVRNTDVLVENLRPGAMSKLGLGYSDLAPRAPSLIYA
EECCCCEEEEEECCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHCCCHHHCCCCCCCEEEE
SASGWGQDGPDAGLPGLDIMAQARSGLMSLTGSMGGPAVKVGVPVCDLVCALYVALAVTA
ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH
ALHERQRSGLGQFIDVSLLESAVSLAVWEAPRYFVNGEVGAPLGTAHQSLAPYQAFGTSD
HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCCHHHCCCCC
GKVTLGAVTTKTWSALCEVLGLPELERDPRFVDGGTRFRHRAELAEVLEGATRAFSTSEL
CCEEEEEEHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCHHHH
LDKLIRAQVPCARIADIEQALTDPHLAEREFFWDSSHPTIGTVRQTRSPMRFSRTPTVAG
HHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
QAGPLLGQHTQQVLAEFGAGEA
CCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]