| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is fbpA [H]
Identifier: 119716254
GI number: 119716254
Start: 2167558
End: 2168559
Strand: Reverse
Name: fbpA [H]
Synonym: Noca_2022
Alternate gene names: 119716254
Gene position: 2168559-2167558 (Counterclockwise)
Preceding gene: 119716256
Following gene: 119716253
Centisome position: 43.49
GC content: 68.96
Gene sequence:
>1002_bases ATGAAGCGCGTACCGGCCCTCCTCGCCCTGTCCCTCGCAGCCACGCTGCTCGCCACCGGCTGCGGCAGCGACAGCGACGC CCTGGTCATCTACAACGCCCAGCACGAGGAGCTGATGACCGACGTCGCCAAGGCCTTCACCGACGAGACCGGCATCGACG TCGAGCTGCGCAACGGCAAGGACCTGGAGATGTCCGCCCAGCTGGTCGCCGAGGGCAAGGCCTCGCCCGCCGACGTGTTC CTGACCGAGAACTCCCCCGCCATGGCGCAGGTCGAGAACGCCGGCCTGTTCACCGAGCTCCCGCAGGACGCGGTCGCCCC GATCCCGGCGATGTACCGGCCACGCAGCGGGCTGTGGACCGGCTTCGTGGCCCGCTCGACCGTGCTCGTCTACAACACCG ACCAGGTCTCCGCGGACGAGCTGCCCGACTCGATCCTCGACCTCGCCGACCCCGAGTGGAAGGGCCGGATCTCCTTCTCC CCCACCGGCGCGGACTTCCAGGCGATCGTCGCCGCGGTCCTCGACCTCGAGGGCGAGCAGAAGACCCGCGCCTGGCTGGA GGGCATCAAGGCCAACGGCACCGTGTACGACGGCAACAACGTCGTCCTCGAGTCGGTCAACTCCGGCGAGTCCGAGGTCG GGATCATCTACCACTACTACTGGTACCGCGACCAGGCCGAGTCGGGCGACGTCTCCGACCACAGCGCCCTGTACTTCTTC GGCCACCAGGACCCCGGCGCGTTCGTGAGCGTCTCCGGCGCCGGCATCCTCGCCTCCAGCGACCACCAGGCGGACGCGGA GAAGTTCGTGTCCTACCTGACCAGCACCGCCGGCCAGCAGGTGCTCGCCGACAGCTACGCGCTGGAGTACCCGCTCAACC CCGACGTCCAGCTCGACCCACCGGTCAAGCCGTTCGCCGAGCTCGATCCGCCCCAGGTCAACGTCTCGGACCTCGACGGC AAGGCCGTGGTGGACCTGATGACCGAGGTCGGGTTCCTCTGA
Upstream 100 bases:
>100_bases CCACCCTGGCCGGTTCGCGCCGGTCCTCTGGGCGGACCGCGGTTGGGCCCGCCGTACGCCATTGAGTATGGTTAGCCAAC CCTAATCTTCTGAAGGAACC
Downstream 100 bases:
>100_bases GCGACCTGGTGCAGCTGCCGCTGCCCGGGACGGAGCCGGCAGCCCGCACGCACCCGCAGCGTCCCGAGCCCGCTCCGCCA TTCCTCCTGGCGCTGGGCGC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: Iron(III)-binding periplasmic protein [H]
Number of amino acids: Translated: 333; Mature: 333
Protein sequence:
>333_residues MKRVPALLALSLAATLLATGCGSDSDALVIYNAQHEELMTDVAKAFTDETGIDVELRNGKDLEMSAQLVAEGKASPADVF LTENSPAMAQVENAGLFTELPQDAVAPIPAMYRPRSGLWTGFVARSTVLVYNTDQVSADELPDSILDLADPEWKGRISFS PTGADFQAIVAAVLDLEGEQKTRAWLEGIKANGTVYDGNNVVLESVNSGESEVGIIYHYYWYRDQAESGDVSDHSALYFF GHQDPGAFVSVSGAGILASSDHQADAEKFVSYLTSTAGQQVLADSYALEYPLNPDVQLDPPVKPFAELDPPQVNVSDLDG KAVVDLMTEVGFL
Sequences:
>Translated_333_residues MKRVPALLALSLAATLLATGCGSDSDALVIYNAQHEELMTDVAKAFTDETGIDVELRNGKDLEMSAQLVAEGKASPADVF LTENSPAMAQVENAGLFTELPQDAVAPIPAMYRPRSGLWTGFVARSTVLVYNTDQVSADELPDSILDLADPEWKGRISFS PTGADFQAIVAAVLDLEGEQKTRAWLEGIKANGTVYDGNNVVLESVNSGESEVGIIYHYYWYRDQAESGDVSDHSALYFF GHQDPGAFVSVSGAGILASSDHQADAEKFVSYLTSTAGQQVLADSYALEYPLNPDVQLDPPVKPFAELDPPQVNVSDLDG KAVVDLMTEVGFL >Mature_333_residues MKRVPALLALSLAATLLATGCGSDSDALVIYNAQHEELMTDVAKAFTDETGIDVELRNGKDLEMSAQLVAEGKASPADVF LTENSPAMAQVENAGLFTELPQDAVAPIPAMYRPRSGLWTGFVARSTVLVYNTDQVSADELPDSILDLADPEWKGRISFS PTGADFQAIVAAVLDLEGEQKTRAWLEGIKANGTVYDGNNVVLESVNSGESEVGIIYHYYWYRDQAESGDVSDHSALYFF GHQDPGAFVSVSGAGILASSDHQADAEKFVSYLTSTAGQQVLADSYALEYPLNPDVQLDPPVKPFAELDPPQVNVSDLDG KAVVDLMTEVGFL
Specific function: Part of the ABC transporter complex fbpABC (TC 3.A.1.10.1) involved in Fe(3+) ions import. This protein specifically binds Fe(3+) and is involved in its transmembrane transport [H]
COG id: COG1840
COG function: function code P; ABC-type Fe3+ transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 - InterPro: IPR006061 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 35716; Mature: 35716
Theoretical pI: Translated: 3.91; Mature: 3.91
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRVPALLALSLAATLLATGCGSDSDALVIYNAQHEELMTDVAKAFTDETGIDVELRNGK CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCC DLEMSAQLVAEGKASPADVFLTENSPAMAQVENAGLFTELPQDAVAPIPAMYRPRSGLWT CCHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCHHCCCHHHHCCCCCCCCCCCCCEE GFVARSTVLVYNTDQVSADELPDSILDLADPEWKGRISFSPTGADFQAIVAAVLDLEGEQ EEHHHCEEEEEECCCCCHHHCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCH KTRAWLEGIKANGTVYDGNNVVLESVNSGESEVGIIYHYYWYRDQAESGDVSDHSALYFF HHHHHHHCCCCCCEEECCCCEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEE GHQDPGAFVSVSGAGILASSDHQADAEKFVSYLTSTAGQQVLADSYALEYPLNPDVQLDP ECCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCCHHHHHCCEEEECCCCCCCEECC PVKPFAELDPPQVNVSDLDGKAVVDLMTEVGFL CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MKRVPALLALSLAATLLATGCGSDSDALVIYNAQHEELMTDVAKAFTDETGIDVELRNGK CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCC DLEMSAQLVAEGKASPADVFLTENSPAMAQVENAGLFTELPQDAVAPIPAMYRPRSGLWT CCHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCHHCCCHHHHCCCCCCCCCCCCCEE GFVARSTVLVYNTDQVSADELPDSILDLADPEWKGRISFSPTGADFQAIVAAVLDLEGEQ EEHHHCEEEEEECCCCCHHHCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCH KTRAWLEGIKANGTVYDGNNVVLESVNSGESEVGIIYHYYWYRDQAESGDVSDHSALYFF HHHHHHHCCCCCCEEECCCCEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEE GHQDPGAFVSVSGAGILASSDHQADAEKFVSYLTSTAGQQVLADSYALEYPLNPDVQLDP ECCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCCHHHHHCCEEEECCCCCCCEECC PVKPFAELDPPQVNVSDLDGKAVVDLMTEVGFL CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2404942 [H]