| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119716250
Identifier: 119716250
GI number: 119716250
Start: 2161203
End: 2162423
Strand: Direct
Name: 119716250
Synonym: Noca_2018
Alternate gene names: NA
Gene position: 2161203-2162423 (Clockwise)
Preceding gene: 119716249
Following gene: 119716255
Centisome position: 43.35
GC content: 76.49
Gene sequence:
>1221_bases ATGTTCCTCGACCGGATCGACGGTGGCCGGCGGCTCGCTGCCCTGCTCTCGCACTTCACGGGCACCAACGTCGTGGTCGT CGGCCTGCCCCGCGGCGGGGTGCCGGTGGCCGCGGAGGTCGCCTACCAGCTGCGCGCGCCGCTGGACGTGATCGTGGTCC GCAAGCCCGGCCTGCCGGGGGAGCCGGAGCTCACCGACCCCGAGCGCGCCGCCCTGCGCGAGCGCGCCACCCAGCTGCGC AGCGGCCGGTCCGGCCTGGATCTCTCCGGCCGGGTGGCGCTGATCGTCGACGACGGCATCGCCACCGGTGCCACCGCCGC GGCCGCCTGCCGGGTGGCGCGCGAGGTGGGCGCGTCGTACGTCGTGGTCGCCGCGCCGGTCGTCGCGCCCGGCATCGACG CCCGCGACCTGGACGCCGACGAGATCGTGTACGTCGAGATGCCCGCCCGGTTCACCAGCGTGGCGGCCCACTACCAGGAC TTCCGGCCGACCACCGACGAGCAGGTCGTCCGGCTCCTCGACGGCGGCCGCGGGGACGGCGTCGACCCGAGCGGCCAGAC GGTGCGGATCCCCGCCGGCGGCGCGATCCTCGCGGGCACCCTGCGGATCCCGGACCACCCGCGAGGGGTCGTGCTGTTCG CCCACGGCAGCGGCTCCAGCCGGCACAGCCTGCGCAACGTCAAGGTCGCGCGGCGGCTGACGAACGCCGGCTTCGCCACC CTGCTGCTGGACCTGCTGAGCCCGGCCGAGGAGTCGTCGTGCGACCGCGTCTTCGACGTGGACGGCCTGGCGCACCGGCT GATCACGGCCACCAACTGGCTGGCCGGCGTCCCGGCGCTCGAGGGCCTGCCGATCGGCTACTTCGGCGCGAGCACGGGCG CCGCGGCGGCGCTGCGCGCGGCCGCCGCCCTGGACGGCCGGATCACCGCCGTCGTCGCCCGCGGTGGCCGCCCCGACCTG GCCGGCGACGCGCTGGGCCGGGTCGCTGCACCGACCCTGCTGGTGGTCGGCGGCGCCGACCCCACGGTGCTCGAGCTCAA CCGCTGGGCGGCGGCCCGGATGCACTGCCCGAGCCAGGTCACCATCGTCCCCGGCGCCACCCACCTGTTCTCCGAGCCGC ACTCGCTGGAGCGGGTGGCCGAGCTCGCGACCGAGTGGTTCAGCCGGCACCTCACCACCCAGGCGGCGGCCGGCACCGTC AGCCTCGGCGTCTCCTGCTGA
Upstream 100 bases:
>100_bases GATGGGGACATTAGGCCCCGGGCCGCCGGGCCATGGGGCTCTGTCTCGTACGTCACTCCCCGGGTGAACGTGGAGGGGAC AGAACGGAGGTGTCCACGAG
Downstream 100 bases:
>100_bases GCCGCGGCCGCACCGCCCGCTCCAGCCGGGTGTAGGCGCAGCAGCACGCCACGCCCACCGCCAGCGAGGCGCCGATCGCG AGCGCGGGCCGCCCGGCCGC
Product: phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 406
Protein sequence:
>406_residues MFLDRIDGGRRLAALLSHFTGTNVVVVGLPRGGVPVAAEVAYQLRAPLDVIVVRKPGLPGEPELTDPERAALRERATQLR SGRSGLDLSGRVALIVDDGIATGATAAAACRVAREVGASYVVVAAPVVAPGIDARDLDADEIVYVEMPARFTSVAAHYQD FRPTTDEQVVRLLDGGRGDGVDPSGQTVRIPAGGAILAGTLRIPDHPRGVVLFAHGSGSSRHSLRNVKVARRLTNAGFAT LLLDLLSPAEESSCDRVFDVDGLAHRLITATNWLAGVPALEGLPIGYFGASTGAAAALRAAAALDGRITAVVARGGRPDL AGDALGRVAAPTLLVVGGADPTVLELNRWAAARMHCPSQVTIVPGATHLFSEPHSLERVAELATEWFSRHLTTQAAAGTV SLGVSC
Sequences:
>Translated_406_residues MFLDRIDGGRRLAALLSHFTGTNVVVVGLPRGGVPVAAEVAYQLRAPLDVIVVRKPGLPGEPELTDPERAALRERATQLR SGRSGLDLSGRVALIVDDGIATGATAAAACRVAREVGASYVVVAAPVVAPGIDARDLDADEIVYVEMPARFTSVAAHYQD FRPTTDEQVVRLLDGGRGDGVDPSGQTVRIPAGGAILAGTLRIPDHPRGVVLFAHGSGSSRHSLRNVKVARRLTNAGFAT LLLDLLSPAEESSCDRVFDVDGLAHRLITATNWLAGVPALEGLPIGYFGASTGAAAALRAAAALDGRITAVVARGGRPDL AGDALGRVAAPTLLVVGGADPTVLELNRWAAARMHCPSQVTIVPGATHLFSEPHSLERVAELATEWFSRHLTTQAAAGTV SLGVSC >Mature_406_residues MFLDRIDGGRRLAALLSHFTGTNVVVVGLPRGGVPVAAEVAYQLRAPLDVIVVRKPGLPGEPELTDPERAALRERATQLR SGRSGLDLSGRVALIVDDGIATGATAAAACRVAREVGASYVVVAAPVVAPGIDARDLDADEIVYVEMPARFTSVAAHYQD FRPTTDEQVVRLLDGGRGDGVDPSGQTVRIPAGGAILAGTLRIPDHPRGVVLFAHGSGSSRHSLRNVKVARRLTNAGFAT LLLDLLSPAEESSCDRVFDVDGLAHRLITATNWLAGVPALEGLPIGYFGASTGAAAALRAAAALDGRITAVVARGGRPDL AGDALGRVAAPTLLVVGGADPTVLELNRWAAARMHCPSQVTIVPGATHLFSEPHSLERVAELATEWFSRHLTTQAAAGTV SLGVSC
Specific function: Unknown
COG id: COG1926
COG function: function code R; Predicted phosphoribosyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the dienelactone hydrolase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002925 - InterPro: IPR000836 [H]
Pfam domain/function: PF01738 DLH; PF00156 Pribosyltran [H]
EC number: NA
Molecular weight: Translated: 42161; Mature: 42161
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLDRIDGGRRLAALLSHFTGTNVVVVGLPRGGVPVAAEVAYQLRAPLDVIVVRKPGLPG CCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCC EPELTDPERAALRERATQLRSGRSGLDLSGRVALIVDDGIATGATAAAACRVAREVGASY CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCE VVVAAPVVAPGIDARDLDADEIVYVEMPARFTSVAAHYQDFRPTTDEQVVRLLDGGRGDG EEEECCHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC VDPSGQTVRIPAGGAILAGTLRIPDHPRGVVLFAHGSGSSRHSLRNVKVARRLTNAGFAT CCCCCCEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHH LLLDLLSPAEESSCDRVFDVDGLAHRLITATNWLAGVPALEGLPIGYFGASTGAAAALRA HHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHH AAALDGRITAVVARGGRPDLAGDALGRVAAPTLLVVGGADPTVLELNRWAAARMHCPSQV HHHCCCCEEEEEECCCCCCCCHHHHHHHCCCEEEEECCCCCCEEEECCHHHHHHCCCCEE TIVPGATHLFSEPHSLERVAELATEWFSRHLTTQAAAGTVSLGVSC EEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC >Mature Secondary Structure MFLDRIDGGRRLAALLSHFTGTNVVVVGLPRGGVPVAAEVAYQLRAPLDVIVVRKPGLPG CCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEEECCCCCC EPELTDPERAALRERATQLRSGRSGLDLSGRVALIVDDGIATGATAAAACRVAREVGASY CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCE VVVAAPVVAPGIDARDLDADEIVYVEMPARFTSVAAHYQDFRPTTDEQVVRLLDGGRGDG EEEECCHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC VDPSGQTVRIPAGGAILAGTLRIPDHPRGVVLFAHGSGSSRHSLRNVKVARRLTNAGFAT CCCCCCEEEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHH LLLDLLSPAEESSCDRVFDVDGLAHRLITATNWLAGVPALEGLPIGYFGASTGAAAALRA HHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHH AAALDGRITAVVARGGRPDLAGDALGRVAAPTLLVVGGADPTVLELNRWAAARMHCPSQV HHHCCCCEEEEEECCCCCCCCHHHHHHHCCCEEEEECCCCCCEEEECCHHHHHHCCCCEE TIVPGATHLFSEPHSLERVAELATEWFSRHLTTQAAAGTVSLGVSC EEECCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]