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The map label for this gene is ycdB [C]

Identifier: 119716234

GI number: 119716234

Start: 2144060

End: 2145205

Strand: Reverse

Name: ycdB [C]

Synonym: Noca_2002

Alternate gene names: 119716234

Gene position: 2145205-2144060 (Counterclockwise)

Preceding gene: 119716235

Following gene: 119716225

Centisome position: 43.03

GC content: 77.31

Gene sequence:

>1146_bases
ATGGCCGGATCCGAGACATCCGCCCGGTCCGGATTCGGCCGGCGGCGGTTCCTCGGGTACGCCGGGTCAGCGGTCGCGGG
TGCGGCCGCCGGCACGGCCGGCGGTGCCGCCTGGGGCGCCGGTCGGGACCGCCGCGACGACCCGACGCGGAGCGGACCGG
GTGCGGAGCTCTCGCCGTACGGCGTCCACCAGCCGGGCGTCGCCGCGCCGACCCCGCCGGTGGTCGAGCTGGTCGCGCTC
GACCTGCTGCCCGACGCCGACCGCGACGCTCTCGGGCGGCTGCTCCGGGCGTGGACCGGCGACGTCGAGGCGCTGACCAC
CGGGCGTCCGACCCCCGGCGACACCGAGCCGTGGCTGGCCGCGGCGCGCGCCGACCTGACGATCACCGTCGGGCTCGGCC
CGGGCGCCCTGGCCGCCGGGCGGATCGAGCCGCCGCGCGGGTTCGAGCCGGTGCCACCGATGCGCCACGACCGGCTCGAG
GAGCGTTGGTCGGGCGGGGACCTGGTGCTGGTCGTCGGCGGCCGCGAGGGGACGACGGTCGCGCACGCGGTGCGCCAGCT
GGTCCGCGACGCCCGGCCGTTCGCCCGGGAGCGTTGGCGCCAGGCCGGGTTCTGGAACGGCGTCGACGCCGAGGGCCGGC
CGATGACGGGGCGCAACCTGTTCGGGCAGGTCGACGGGACCGCCAACCCGGCGCCGGGCACCGGGACCTTCGACGAGACC
GTGTGGCTGCGCGAGCCGCCGTGGACCGGCGGCAGCACGCTGGTCGTACGCCGGATCGCGATGGACCTGGACACCTGGGC
GGAGCTCACCCGCGACCGCCAGGAGCGGGCCCTGGGCCGCAGCCTCGACGACGGCGCCCGGCTCGACGGCCCGGGTCCAC
ACGCGCACGCCCGGCTCGCACACCCGATGGAGAACGCCGGGGCCCGGATCTTCCGCAAGGGCGCCAGCTACGCCACCGCG
GAGGAGAGCGGCCTGCTGTTCTGCAGCTTCCAGGCCTCGGTCGCCGGGCAGTTCGTGCCGATCCAGCGGTCCCTGGACCG
CGCGGACGCGCTCAACACCTGGACCACGGCGACCGGCTCGGCGGTGTTCGTGGTGCTGCCCGGGTTCGAGCGCGGCGACT
GGCTGGGGTCGACGGTGCTGCGATGA

Upstream 100 bases:

>100_bases
TCTCCGACGGCACCACCCTGGAGGTCACCGCGCCGGTGAAGGAGTTCACCGAGGACGGCGGCCACTACCACGCGCCCGGC
ACCGGGGAGCACGAGCACTG

Downstream 100 bases:

>100_bases
GGGCGCGCGCTCAGCGCCGCCAGGCGGTGAGCCGCCGGGCCGGGGCGTCCGCCTGCGGCGACTGCGTCTGCTGCCAGACG
CGCCGCCACTGGGCGACCTT

Product: Dyp-type peroxidase family protein

Products: NA

Alternate protein names: Dye-decolorizing peroxidase; DyP [H]

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MAGSETSARSGFGRRRFLGYAGSAVAGAAAGTAGGAAWGAGRDRRDDPTRSGPGAELSPYGVHQPGVAAPTPPVVELVAL
DLLPDADRDALGRLLRAWTGDVEALTTGRPTPGDTEPWLAAARADLTITVGLGPGALAAGRIEPPRGFEPVPPMRHDRLE
ERWSGGDLVLVVGGREGTTVAHAVRQLVRDARPFARERWRQAGFWNGVDAEGRPMTGRNLFGQVDGTANPAPGTGTFDET
VWLREPPWTGGSTLVVRRIAMDLDTWAELTRDRQERALGRSLDDGARLDGPGPHAHARLAHPMENAGARIFRKGASYATA
EESGLLFCSFQASVAGQFVPIQRSLDRADALNTWTTATGSAVFVVLPGFERGDWLGSTVLR

Sequences:

>Translated_381_residues
MAGSETSARSGFGRRRFLGYAGSAVAGAAAGTAGGAAWGAGRDRRDDPTRSGPGAELSPYGVHQPGVAAPTPPVVELVAL
DLLPDADRDALGRLLRAWTGDVEALTTGRPTPGDTEPWLAAARADLTITVGLGPGALAAGRIEPPRGFEPVPPMRHDRLE
ERWSGGDLVLVVGGREGTTVAHAVRQLVRDARPFARERWRQAGFWNGVDAEGRPMTGRNLFGQVDGTANPAPGTGTFDET
VWLREPPWTGGSTLVVRRIAMDLDTWAELTRDRQERALGRSLDDGARLDGPGPHAHARLAHPMENAGARIFRKGASYATA
EESGLLFCSFQASVAGQFVPIQRSLDRADALNTWTTATGSAVFVVLPGFERGDWLGSTVLR
>Mature_380_residues
AGSETSARSGFGRRRFLGYAGSAVAGAAAGTAGGAAWGAGRDRRDDPTRSGPGAELSPYGVHQPGVAAPTPPVVELVALD
LLPDADRDALGRLLRAWTGDVEALTTGRPTPGDTEPWLAAARADLTITVGLGPGALAAGRIEPPRGFEPVPPMRHDRLEE
RWSGGDLVLVVGGREGTTVAHAVRQLVRDARPFARERWRQAGFWNGVDAEGRPMTGRNLFGQVDGTANPAPGTGTFDETV
WLREPPWTGGSTLVVRRIAMDLDTWAELTRDRQERALGRSLDDGARLDGPGPHAHARLAHPMENAGARIFRKGASYATAE
ESGLLFCSFQASVAGQFVPIQRSLDRADALNTWTTATGSAVFVVLPGFERGDWLGSTVLR

Specific function: Peroxidase that is able to convert a large number of compounds, but its physiological substrate is not known. Shows high reactivity towards anthraquinone dyes (e.g. Reactive Blue 19) and a modest activity towards standard peroxidase substrates (such as gu

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=418, Percent_Identity=28.7081339712919, Blast_Score=125, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 40406; Mature: 40274

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSETSARSGFGRRRFLGYAGSAVAGAAAGTAGGAAWGAGRDRRDDPTRSGPGAELSPY
CCCCCCCHHCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVHQPGVAAPTPPVVELVALDLLPDADRDALGRLLRAWTGDVEALTTGRPTPGDTEPWLA
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHH
AARADLTITVGLGPGALAAGRIEPPRGFEPVPPMRHDRLEERWSGGDLVLVVGGREGTTV
HHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHH
AHAVRQLVRDARPFARERWRQAGFWNGVDAEGRPMTGRNLFGQVDGTANPAPGTGTFDET
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCE
VWLREPPWTGGSTLVVRRIAMDLDTWAELTRDRQERALGRSLDDGARLDGPGPHAHARLA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHC
HPMENAGARIFRKGASYATAEESGLLFCSFQASVAGQFVPIQRSLDRADALNTWTTATGS
CCHHHHCHHHHHCCCCCCCCCCCCEEEEEECHHHCCCEEEHHHHHHHHHHCCCCCCCCCC
AVFVVLPGFERGDWLGSTVLR
EEEEEECCCCCCCCCHHHHCC
>Mature Secondary Structure 
AGSETSARSGFGRRRFLGYAGSAVAGAAAGTAGGAAWGAGRDRRDDPTRSGPGAELSPY
CCCCCCHHCCCCHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GVHQPGVAAPTPPVVELVALDLLPDADRDALGRLLRAWTGDVEALTTGRPTPGDTEPWLA
CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHH
AARADLTITVGLGPGALAAGRIEPPRGFEPVPPMRHDRLEERWSGGDLVLVVGGREGTTV
HHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHH
AHAVRQLVRDARPFARERWRQAGFWNGVDAEGRPMTGRNLFGQVDGTANPAPGTGTFDET
HHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCE
VWLREPPWTGGSTLVVRRIAMDLDTWAELTRDRQERALGRSLDDGARLDGPGPHAHARLA
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHC
HPMENAGARIFRKGASYATAEESGLLFCSFQASVAGQFVPIQRSLDRADALNTWTTATGS
CCHHHHCHHHHHCCCCCCCCCCCCEEEEEECHHHCCCEEEHHHHHHHHHHCCCCCCCCCC
AVFVVLPGFERGDWLGSTVLR
EEEEEECCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA