| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is argS [H]
Identifier: 119715977
GI number: 119715977
Start: 1851047
End: 1852615
Strand: Direct
Name: argS [H]
Synonym: Noca_1742
Alternate gene names: 119715977
Gene position: 1851047-1852615 (Clockwise)
Preceding gene: 119715974
Following gene: 119715978
Centisome position: 37.13
GC content: 70.62
Gene sequence:
>1569_bases GTGACGGTGGAGCGTCCGCGATCCAAGGAGCACGGCGACTACGCCACCAACGTCGCCCTCCAGCTGGGCAAGAAGGCCGG GATGAACCCGCGCGACCTGGCCACGCTGGTCCAGCAGCGCCTGGAGCAGACCGACGGCATCGCCGGGGTCGACATCGCCG GCCCGGGCTTCCTCAACATCACGGTCGCCGCCGGTGCCCAGGGCATCGTGGCGGCTGAGATCGTCGACGCCGGCGCGGCG TACGGGCACACCGACGTGCTGCGCGGCGAGCGGGTCAACGTCGAGTTCATCTCGGCCAACCCGACCGGGCCGCTGCACCT GGGCCACACCCGCTGGGCCGTCGTGGGCGACGCGATCTCCCGCGTGCTCGAGGCCGGCGGGGCCACCGTGACCCGCGAGT TCTACATCAACGACCGCGGCAACCAGATGGACCTCTTCGGTGCGTCCATCGAGGCCGCCGCGCTCGGCAAGCCGACCCCC GATGACGGTTACCACGGCGGCTACATCGCGGACCTCGCGCGGCAGATCGTCGCCGAGGACCCGGCGATCCTCGAGCTCCC CGACGAGGAGCGCCTGGTCGCGTTCCGCGAGCAGGGCTACGCGCTCCAGCTCGCCCAGCAGCAGGAGCAGCTGGCCCGGT TCAACACCGTCTTCGACGTGTGGTTCTCCGAGCGCAGCCTGCACGACAGCGATGACGTCGCGGCCGGGCTGGACAAGCTG CGGGCGCAGGGGCACCTCTACGAGGACGACGGTGCCTTGTGGATGCGGACCACCGACTTCGGTGACGACAAGGACCGGGT GCTGATCCGGTCGAACGGCGAGCTGACCTACTTCGCCAGCGATACCGCCTACTACGTGAACAAGCGCGAGCGCGGCTTCG ACCGCTGCATCTACCTGCTCGGCGCCGACCACCACGGCTACGTCGGCCGGCTCAAGGCGATGGCCGCCTGCGCCGGGGAC GACCCGGAGCGCAACATCGAGGTGCTGATCGGCCAGCTGGTCAAGATCGTCCGGGGCGGCGAGGAGGTGCGCCTCTCGAA GCGGGCCGGCGAGATCGTCTCCCTCGAGGAGCTGATCGACGAGATCGGCACCGACGCGCTGCGCTACTCCCTCGCCCGCT ACCCGGCCGACTCGCCGCTCACGCTGGACATCGCCGAGATCACCAAGCAGTCCAGCGAGAACCCGGTGTTCTACGTGCAG TACGCCCACGCCCGGATCGCCTCGATCCTGCGCAACGCCGAGGACCTCGGCATCGCCTGGTCGACCGGTGACTTCGACCC GGCGCTGCTGTCCCACCCCAAGGAGGGTGAGCTGCTGCGCGCGCTGGCGGAGTTCCCCCGGGTGGTCGCCGCCGCCGCGG AGCTGCGCGAGCCGCACCGGGTGGCGCGCTACCTGGAGGACATGGCCGGTGTCTACCACCGGTTCTACGACAACTGCCGG GTGCTGCCGATGGGCGATGAGCAAGCCGGTGACCTGCACCGCGCCCGGCTCGTGCTCGTCGCGGCCACCCGCACCGTCCT GGCCAACGGCCTCGACCTGGTCGGGGTCTCCGCACCCGAGCGGATGTAG
Upstream 100 bases:
>100_bases ACCGGTGACTCCAGAGCAGCTCTCCACCGCGATCGTCGACGTACTGACGACGCTGTCCGACGAGGGTGCGATCACCCTCC CCGACGGCGTCCCTGCGAAC
Downstream 100 bases:
>100_bases GACGGATGAGCCACGAAGCCGGCTGGGCGCACGCGCCCGGCGCCCTCCGCGGTCCCGCCTGGCTGCAGGCGCCCGCAGAT CCGGACGCCCTGGTCTCGCA
Product: arginyl-tRNA synthetase
Products: NA
Alternate protein names: Arginine--tRNA ligase; ArgRS [H]
Number of amino acids: Translated: 522; Mature: 521
Protein sequence:
>522_residues MTVERPRSKEHGDYATNVALQLGKKAGMNPRDLATLVQQRLEQTDGIAGVDIAGPGFLNITVAAGAQGIVAAEIVDAGAA YGHTDVLRGERVNVEFISANPTGPLHLGHTRWAVVGDAISRVLEAGGATVTREFYINDRGNQMDLFGASIEAAALGKPTP DDGYHGGYIADLARQIVAEDPAILELPDEERLVAFREQGYALQLAQQQEQLARFNTVFDVWFSERSLHDSDDVAAGLDKL RAQGHLYEDDGALWMRTTDFGDDKDRVLIRSNGELTYFASDTAYYVNKRERGFDRCIYLLGADHHGYVGRLKAMAACAGD DPERNIEVLIGQLVKIVRGGEEVRLSKRAGEIVSLEELIDEIGTDALRYSLARYPADSPLTLDIAEITKQSSENPVFYVQ YAHARIASILRNAEDLGIAWSTGDFDPALLSHPKEGELLRALAEFPRVVAAAAELREPHRVARYLEDMAGVYHRFYDNCR VLPMGDEQAGDLHRARLVLVAATRTVLANGLDLVGVSAPERM
Sequences:
>Translated_522_residues MTVERPRSKEHGDYATNVALQLGKKAGMNPRDLATLVQQRLEQTDGIAGVDIAGPGFLNITVAAGAQGIVAAEIVDAGAA YGHTDVLRGERVNVEFISANPTGPLHLGHTRWAVVGDAISRVLEAGGATVTREFYINDRGNQMDLFGASIEAAALGKPTP DDGYHGGYIADLARQIVAEDPAILELPDEERLVAFREQGYALQLAQQQEQLARFNTVFDVWFSERSLHDSDDVAAGLDKL RAQGHLYEDDGALWMRTTDFGDDKDRVLIRSNGELTYFASDTAYYVNKRERGFDRCIYLLGADHHGYVGRLKAMAACAGD DPERNIEVLIGQLVKIVRGGEEVRLSKRAGEIVSLEELIDEIGTDALRYSLARYPADSPLTLDIAEITKQSSENPVFYVQ YAHARIASILRNAEDLGIAWSTGDFDPALLSHPKEGELLRALAEFPRVVAAAAELREPHRVARYLEDMAGVYHRFYDNCR VLPMGDEQAGDLHRARLVLVAATRTVLANGLDLVGVSAPERM >Mature_521_residues TVERPRSKEHGDYATNVALQLGKKAGMNPRDLATLVQQRLEQTDGIAGVDIAGPGFLNITVAAGAQGIVAAEIVDAGAAY GHTDVLRGERVNVEFISANPTGPLHLGHTRWAVVGDAISRVLEAGGATVTREFYINDRGNQMDLFGASIEAAALGKPTPD DGYHGGYIADLARQIVAEDPAILELPDEERLVAFREQGYALQLAQQQEQLARFNTVFDVWFSERSLHDSDDVAAGLDKLR AQGHLYEDDGALWMRTTDFGDDKDRVLIRSNGELTYFASDTAYYVNKRERGFDRCIYLLGADHHGYVGRLKAMAACAGDD PERNIEVLIGQLVKIVRGGEEVRLSKRAGEIVSLEELIDEIGTDALRYSLARYPADSPLTLDIAEITKQSSENPVFYVQY AHARIASILRNAEDLGIAWSTGDFDPALLSHPKEGELLRALAEFPRVVAAAAELREPHRVARYLEDMAGVYHRFYDNCRV LPMGDEQAGDLHRARLVLVAATRTVLANGLDLVGVSAPERM
Specific function: Unknown
COG id: COG0018
COG function: function code J; Arginyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI15149476, Length=580, Percent_Identity=24.6551724137931, Blast_Score=117, Evalue=2e-26, Organism=Escherichia coli, GI1788184, Length=569, Percent_Identity=25.3075571177504, Blast_Score=131, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6320548, Length=553, Percent_Identity=25.3164556962025, Blast_Score=138, Evalue=2e-33, Organism=Drosophila melanogaster, GI18859963, Length=575, Percent_Identity=24.1739130434783, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI28571570, Length=548, Percent_Identity=24.4525547445255, Blast_Score=85, Evalue=1e-16,
Paralogues:
None
Copy number: 789 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR001278 - InterPro: IPR015945 - InterPro: IPR005148 - InterPro: IPR008909 - InterPro: IPR014729 - InterPro: IPR009080 [H]
Pfam domain/function: PF03485 Arg_tRNA_synt_N; PF05746 DALR_1; PF00750 tRNA-synt_1d [H]
EC number: =6.1.1.19 [H]
Molecular weight: Translated: 57180; Mature: 57049
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVERPRSKEHGDYATNVALQLGKKAGMNPRDLATLVQQRLEQTDGIAGVDIAGPGFLNI CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE TVAAGAQGIVAAEIVDAGAAYGHTDVLRGERVNVEFISANPTGPLHLGHTRWAVVGDAIS EEECCCCCEEEHHHHHCCCCCCCHHHCCCCEEEEEEEECCCCCCEEECCCHHHHHHHHHH RVLEAGGATVTREFYINDRGNQMDLFGASIEAAALGKPTPDDGYHGGYIADLARQIVAED HHHHCCCCEEEEEEEECCCCCEEEEECCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHCC PAILELPDEERLVAFREQGYALQLAQQQEQLARFNTVFDVWFSERSLHDSDDVAAGLDKL CCEEECCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH RAQGHLYEDDGALWMRTTDFGDDKDRVLIRSNGELTYFASDTAYYVNKRERGFDRCIYLL HHCCCEEECCCEEEEEECCCCCCCCEEEEEECCCEEEEECCCEEEECCCCCCCCCEEEEE GADHHGYVGRLKAMAACAGDDPERNIEVLIGQLVKIVRGGEEVRLSKRAGEIVSLEELID ECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHEEEHHHCCCEEEHHHHHH EIGTDALRYSLARYPADSPLTLDIAEITKQSSENPVFYVQYAHARIASILRNAEDLGIAW HHCCHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCCEEEEEEHHHHHHHHHHCHHHCCEEE STGDFDPALLSHPKEGELLRALAEFPRVVAAAAELREPHRVARYLEDMAGVYHRFYDNCR ECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCE VLPMGDEQAGDLHRARLVLVAATRTVLANGLDLVGVSAPERM EEECCCCCCCCHHHHEEEEEEHHHHHHHCCCCEEECCCCCCC >Mature Secondary Structure TVERPRSKEHGDYATNVALQLGKKAGMNPRDLATLVQQRLEQTDGIAGVDIAGPGFLNI CCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEEEE TVAAGAQGIVAAEIVDAGAAYGHTDVLRGERVNVEFISANPTGPLHLGHTRWAVVGDAIS EEECCCCCEEEHHHHHCCCCCCCHHHCCCCEEEEEEEECCCCCCEEECCCHHHHHHHHHH RVLEAGGATVTREFYINDRGNQMDLFGASIEAAALGKPTPDDGYHGGYIADLARQIVAED HHHHCCCCEEEEEEEECCCCCEEEEECCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHCC PAILELPDEERLVAFREQGYALQLAQQQEQLARFNTVFDVWFSERSLHDSDDVAAGLDKL CCEEECCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH RAQGHLYEDDGALWMRTTDFGDDKDRVLIRSNGELTYFASDTAYYVNKRERGFDRCIYLL HHCCCEEECCCEEEEEECCCCCCCCEEEEEECCCEEEEECCCEEEECCCCCCCCCEEEEE GADHHGYVGRLKAMAACAGDDPERNIEVLIGQLVKIVRGGEEVRLSKRAGEIVSLEELID ECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHEEEHHHCCCEEEHHHHHH EIGTDALRYSLARYPADSPLTLDIAEITKQSSENPVFYVQYAHARIASILRNAEDLGIAW HHCCHHHHHHHHHCCCCCCCEEEHHHHHHCCCCCCEEEEEEHHHHHHHHHHCHHHCCEEE STGDFDPALLSHPKEGELLRALAEFPRVVAAAAELREPHRVARYLEDMAGVYHRFYDNCR ECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCE VLPMGDEQAGDLHRARLVLVAATRTVLANGLDLVGVSAPERM EEECCCCCCCCHHHHEEEEEEHHHHHHHCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA