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The map label for this gene is xerD [H]

Identifier: 119715826

GI number: 119715826

Start: 1690904

End: 1691500

Strand: Reverse

Name: xerD [H]

Synonym: Noca_1590

Alternate gene names: 119715826

Gene position: 1691500-1690904 (Counterclockwise)

Preceding gene: 119715829

Following gene: 119715822

Centisome position: 33.93

GC content: 67.84

Gene sequence:

>597_bases
ATGCGGCATCAAACCTGGGGCGCTTCAGACCGCTACCGACTCATGGTCGAGACAGCGATCGAGACCGGGATGCGTTGGGG
CGAACTCATCGCACTGAAGCCCCGGCACGTCGACTTCCTGCGGCGCACGATCACTGTCGAGGACACCATCGTGGAGGTGT
CGCGGAAGCACTCGCCGACCGGCGAGCGGTACGTCGCCAAGCCGTACCCGAAGGACAACGAGCCTCGGACGTTCGCCGTC
CGCCAGGACTGGCTCGACGCCGTCGCCGCGCACACGAGGCTCCACGGTCTCGGCCGCGACGACCTGCTCTTCGCCACGTT
GGCGGGCACGCCAATCTCGCGCAACACCTTCCGGACCAGGGTCTGGCAGCCGGCCGTGAAGGCCAGCGGCGTCTCGTTCA
ATGTGCGGATGCACGACCTCCGCCATGCCCACGCCTCCTGGCTCCTGGCCGGCGGGGCGGACCTCAAGACGGTGATGGAC
CGGCTGGGTCACGCGCAGATCCAGACCACCCAGAAGTACCTACATGCGCTGGCCGAGGCCGACCAGCGCAGCATCGATGC
CCTCGACCGCATGACGCGGCGCCGACCAAGCTCGTGA

Upstream 100 bases:

>100_bases
GGGTACTCCGGCAGGTGCTCCAGCACCTGCCGCACGCACCGCTCCTTGACTGCGGGATCGATCTTCTTCGGCATGGTTCG
CATCCTTCCAACTCAAAAGG

Downstream 100 bases:

>100_bases
CTGGGTGATGGTCCCGCATCGCCGCGCTGGGCTCGAATCAACGTGGCACCGGGCCGCCATCTGTACGCGACCGTCGAAGG
CCTATGGAAGTTCGGTGGGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MRHQTWGASDRYRLMVETAIETGMRWGELIALKPRHVDFLRRTITVEDTIVEVSRKHSPTGERYVAKPYPKDNEPRTFAV
RQDWLDAVAAHTRLHGLGRDDLLFATLAGTPISRNTFRTRVWQPAVKASGVSFNVRMHDLRHAHASWLLAGGADLKTVMD
RLGHAQIQTTQKYLHALAEADQRSIDALDRMTRRRPSS

Sequences:

>Translated_198_residues
MRHQTWGASDRYRLMVETAIETGMRWGELIALKPRHVDFLRRTITVEDTIVEVSRKHSPTGERYVAKPYPKDNEPRTFAV
RQDWLDAVAAHTRLHGLGRDDLLFATLAGTPISRNTFRTRVWQPAVKASGVSFNVRMHDLRHAHASWLLAGGADLKTVMD
RLGHAQIQTTQKYLHALAEADQRSIDALDRMTRRRPSS
>Mature_198_residues
MRHQTWGASDRYRLMVETAIETGMRWGELIALKPRHVDFLRRTITVEDTIVEVSRKHSPTGERYVAKPYPKDNEPRTFAV
RQDWLDAVAAHTRLHGLGRDDLLFATLAGTPISRNTFRTRVWQPAVKASGVSFNVRMHDLRHAHASWLLAGGADLKTVMD
RLGHAQIQTTQKYLHALAEADQRSIDALDRMTRRRPSS

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=175, Percent_Identity=30.8571428571429, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 22630; Mature: 22630

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHQTWGASDRYRLMVETAIETGMRWGELIALKPRHVDFLRRTITVEDTIVEVSRKHSPT
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
GERYVAKPYPKDNEPRTFAVRQDWLDAVAAHTRLHGLGRDDLLFATLAGTPISRNTFRTR
CCCEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH
VWQPAVKASGVSFNVRMHDLRHAHASWLLAGGADLKTVMDRLGHAQIQTTQKYLHALAEA
HHCCHHHHCCCEEEEEHHHHHHHHHHEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
DQRSIDALDRMTRRRPSS
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRHQTWGASDRYRLMVETAIETGMRWGELIALKPRHVDFLRRTITVEDTIVEVSRKHSPT
CCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC
GERYVAKPYPKDNEPRTFAVRQDWLDAVAAHTRLHGLGRDDLLFATLAGTPISRNTFRTR
CCCEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHH
VWQPAVKASGVSFNVRMHDLRHAHASWLLAGGADLKTVMDRLGHAQIQTTQKYLHALAEA
HHCCHHHHCCCEEEEEHHHHHHHHHHEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
DQRSIDALDRMTRRRPSS
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA