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The map label for this gene is hofB [C]

Identifier: 119715777

GI number: 119715777

Start: 1634291

End: 1635604

Strand: Direct

Name: hofB [C]

Synonym: Noca_1541

Alternate gene names: 119715777

Gene position: 1634291-1635604 (Clockwise)

Preceding gene: 119715776

Following gene: 119715778

Centisome position: 32.78

GC content: 66.51

Gene sequence:

>1314_bases
ATGACCGACCTCGACTACGCACTGATCAAGCGGCTGCAAGGCGAACTCGGTCGGCTCCGACAGGAGGAGATCCTGCGGCG
GCGGAGCGCCAACCTCCCAGCGCTCACCGGTCCCGACGCGGTCCAGCACGGCAAGGCGCTGGTCCAAACGGTTGTCGGAG
ACTACGAGTCGAACCTCGTCGAGACAGGTTCCGAGCCCATCACGTGGGAAGCGCGGCAGGATCTCGTCGAAGCGCTGGAG
TCCCGTCTCTTCGGAGCGGGCAGCCTGCAGGCACTACTCGACGACGCGAACGTCGAGAACATCGACATCAACGGCTTCCA
ACACGTGTACGTCGAGTACGCCGACGGCACTACCGCGAAGGTGCGACCGATCGCCGGATCGGACGAGGAGCTCGTCGAGA
CCGTCCAGACGCTCGCGGCACACGAGGGGCTCTCGGCTCGGGCCTTCGACGTCGCCAACGTTCGCGTGAATCTCCGGCTC
CCGGATGGTTCGCGCCTCTATGCCGTCCAGTCGGTGACGAAGCAGCCGGTCGTCTCGATCCGACGCCACCGCCACCCTCG
CGTGACTCTCAAGGACCTGATCGGCCTGGAGACGATCGACGAGGAGATGGCCGACTTCTTGGCAGCACTGGTCAGAGCCC
GCAAGAACGTCATGGTCGCCGGGGCCACCAGCGCGGGGAAGACGACCATGCTCCGGGCACTTGCTTCCGAGATCGGTCCG
GACGAACGCATCCTCACAGTCGAGCGTTCGCTCGAGCTCGGCCTCGACGAGGATCTGGAACACCACCCCAACGCGATCGC
GTTCGAGGAGCGCCTGCCGAACGTCGAAGGGGCCGGCGCCGTCACGATGGCCGAGTTGGTCCGCGACACCCTTCGCATGA
ATCCCTCCCGCGTGATCGTCGGGGAGGTCCTCGGCGACGAGGTCGTCACGATGCTCAACGCGATGACCCAGGGCAACGAC
GGCTCGCTGTCCACGATCCACGCGAATTCGTCCTCCGACGTCGTCCACAAGATTGCGACGTACGCCATCCAGGCGCCCGA
ACGACTGCCTTGGGAGGCGACCGTACGGCTGGTCGCGACGGCGCTGGACTTCGTGGTGTTCATCCGTCGGGTGCGCGGCG
AGGACGGGCAGCGACGGGTCGTCGAGTCGATCCGCGAGATCGCCGGGATCAGCGACGACGGCCAGCTCCAGACCAACGAG
CTGTGGGCACCGGATTCGTTCGGCAACGTCGTACGACGCCACGGCGTCCAGGTGCGAGCCCACGACGACCTGGTGGCGGT
GGGTTGGCAGCCGGAGCCGGGTGGGTGGTCGTGA

Upstream 100 bases:

>100_bases
CGGCCCTCATGCGCTCGGCGCGCACAGTCGTAAGCCAGATCGAGCGCCTCGCGAAAGCGCCGGTGCGCAAGGCGGCAGCT
CCCGCATCGGGGGCGCGATC

Downstream 100 bases:

>100_bases
TGGCGATGCTCGGCTTCGTCCTCGCAGTCGCGGCGGCGGCTCTGGGGCTGCTTGTCATCCTGCGCCTGTCCCGCGGACTG
AGTGCGATGCCCAGGATCGA

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MTDLDYALIKRLQGELGRLRQEEILRRRSANLPALTGPDAVQHGKALVQTVVGDYESNLVETGSEPITWEARQDLVEALE
SRLFGAGSLQALLDDANVENIDINGFQHVYVEYADGTTAKVRPIAGSDEELVETVQTLAAHEGLSARAFDVANVRVNLRL
PDGSRLYAVQSVTKQPVVSIRRHRHPRVTLKDLIGLETIDEEMADFLAALVRARKNVMVAGATSAGKTTMLRALASEIGP
DERILTVERSLELGLDEDLEHHPNAIAFEERLPNVEGAGAVTMAELVRDTLRMNPSRVIVGEVLGDEVVTMLNAMTQGND
GSLSTIHANSSSDVVHKIATYAIQAPERLPWEATVRLVATALDFVVFIRRVRGEDGQRRVVESIREIAGISDDGQLQTNE
LWAPDSFGNVVRRHGVQVRAHDDLVAVGWQPEPGGWS

Sequences:

>Translated_437_residues
MTDLDYALIKRLQGELGRLRQEEILRRRSANLPALTGPDAVQHGKALVQTVVGDYESNLVETGSEPITWEARQDLVEALE
SRLFGAGSLQALLDDANVENIDINGFQHVYVEYADGTTAKVRPIAGSDEELVETVQTLAAHEGLSARAFDVANVRVNLRL
PDGSRLYAVQSVTKQPVVSIRRHRHPRVTLKDLIGLETIDEEMADFLAALVRARKNVMVAGATSAGKTTMLRALASEIGP
DERILTVERSLELGLDEDLEHHPNAIAFEERLPNVEGAGAVTMAELVRDTLRMNPSRVIVGEVLGDEVVTMLNAMTQGND
GSLSTIHANSSSDVVHKIATYAIQAPERLPWEATVRLVATALDFVVFIRRVRGEDGQRRVVESIREIAGISDDGQLQTNE
LWAPDSFGNVVRRHGVQVRAHDDLVAVGWQPEPGGWS
>Mature_436_residues
TDLDYALIKRLQGELGRLRQEEILRRRSANLPALTGPDAVQHGKALVQTVVGDYESNLVETGSEPITWEARQDLVEALES
RLFGAGSLQALLDDANVENIDINGFQHVYVEYADGTTAKVRPIAGSDEELVETVQTLAAHEGLSARAFDVANVRVNLRLP
DGSRLYAVQSVTKQPVVSIRRHRHPRVTLKDLIGLETIDEEMADFLAALVRARKNVMVAGATSAGKTTMLRALASEIGPD
ERILTVERSLELGLDEDLEHHPNAIAFEERLPNVEGAGAVTMAELVRDTLRMNPSRVIVGEVLGDEVVTMLNAMTQGNDG
SLSTIHANSSSDVVHKIATYAIQAPERLPWEATVRLVATALDFVVFIRRVRGEDGQRRVVESIREIAGISDDGQLQTNEL
WAPDSFGNVVRRHGVQVRAHDDLVAVGWQPEPGGWS

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 47881; Mature: 47749

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLDYALIKRLQGELGRLRQEEILRRRSANLPALTGPDAVQHGKALVQTVVGDYESNLV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ETGSEPITWEARQDLVEALESRLFGAGSLQALLDDANVENIDINGFQHVYVEYADGTTAK
HCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCEEEEEEEECCCCCEE
VRPIAGSDEELVETVQTLAAHEGLSARAFDVANVRVNLRLPDGSRLYAVQSVTKQPVVSI
EEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHH
RRHRHPRVTLKDLIGLETIDEEMADFLAALVRARKNVMVAGATSAGKTTMLRALASEIGP
HHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCC
DERILTVERSLELGLDEDLEHHPNAIAFEERLPNVEGAGAVTMAELVRDTLRMNPSRVIV
CCEEEEEEHHHCCCCCCCHHHCCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
GEVLGDEVVTMLNAMTQGNDGSLSTIHANSSSDVVHKIATYAIQAPERLPWEATVRLVAT
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALDFVVFIRRVRGEDGQRRVVESIREIAGISDDGQLQTNELWAPDSFGNVVRRHGVQVRA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEE
HDDLVAVGWQPEPGGWS
CCCEEEECCCCCCCCCC
>Mature Secondary Structure 
TDLDYALIKRLQGELGRLRQEEILRRRSANLPALTGPDAVQHGKALVQTVVGDYESNLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
ETGSEPITWEARQDLVEALESRLFGAGSLQALLDDANVENIDINGFQHVYVEYADGTTAK
HCCCCCEEEHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEECCCEEEEEEEECCCCCEE
VRPIAGSDEELVETVQTLAAHEGLSARAFDVANVRVNLRLPDGSRLYAVQSVTKQPVVSI
EEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEHHHHHHHHHHH
RRHRHPRVTLKDLIGLETIDEEMADFLAALVRARKNVMVAGATSAGKTTMLRALASEIGP
HHCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCC
DERILTVERSLELGLDEDLEHHPNAIAFEERLPNVEGAGAVTMAELVRDTLRMNPSRVIV
CCEEEEEEHHHCCCCCCCHHHCCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
GEVLGDEVVTMLNAMTQGNDGSLSTIHANSSSDVVHKIATYAIQAPERLPWEATVRLVAT
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALDFVVFIRRVRGEDGQRRVVESIREIAGISDDGQLQTNELWAPDSFGNVVRRHGVQVRA
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCCEEEE
HDDLVAVGWQPEPGGWS
CCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]