| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715778
Identifier: 119715778
GI number: 119715778
Start: 1635595
End: 1636494
Strand: Direct
Name: 119715778
Synonym: Noca_1542
Alternate gene names: NA
Gene position: 1635595-1636494 (Clockwise)
Preceding gene: 119715777
Following gene: 119715779
Centisome position: 32.8
GC content: 70.22
Gene sequence:
>900_bases GTGGTCGTGATGGCGATGCTCGGCTTCGTCCTCGCAGTCGCGGCGGCGGCTCTGGGGCTGCTTGTCATCCTGCGCCTGTC CCGCGGACTGAGTGCGATGCCCAGGATCGAGTTGCGGCCGTCACTCGACCGACACCAGACCCGGCAGGTCGGCGTCGCCC TCGCGGCCGGTCTCGTCGTGCTGCTCATCACCCGATGGGCGTTGGCCGCCCTCGCGGCCGGTGCCGTCGTCTACCTGTGG CCGCGACTGTTCGGCGGTGGCCGAGCCGGTCGGCGGCAACTGGAGAAGATCGAAGCGCTCGCAGCCTGGACGGAGAGTCT CCGGGACACGGCGACGGCTGCGGCGGGACTTGAGCAGGCGATTCCGGCGACAGTGGGCGCCGCTCACGCATTGCTGCGGG CACCGGTTCGCGATCTCGCGGCCCGGCTGGACGGACGCGTGCCGCTGCCCGAGGCGCTGGCGCGCTTCGCCGACGACGTC GACGACCCCGCCGCGGACATGGTGGTTGCCGCGCTGTCCCTCAACGCCAGGCAGCGCGCCGGAGGCCTCGAGCGGATCCT GACCTCACTCGCCGCCTCGTCTCGCACCGAACTCGAGATGCGCCGCAAGGTCGAGCACGAGCGTCGAGCCCTGCGGAGGC AGGCGCAGCGGATCGCGTTCGCCGTGCTCGGCTTCGTCGCGCTGCAGGCTGTGTTCGCTCGAGGCTGGGTCGAACCGTAC TCGACACCACTCGGCCAACTCGTCCTCGCGATCCTCGCCGCGATCTTCGTCGGGTCGTTCGTGCGCATGAGGTCGCTCTC CAACGGCGAGGTCGAGGCCAAATTCTTGACCTCCCCGCGCGACATCACCGAGATCGCCTCCTACAAGCCGCACCCTGTGC GGATAGGAGGCCGCACGTGA
Upstream 100 bases:
>100_bases GGGCACCGGATTCGTTCGGCAACGTCGTACGACGCCACGGCGTCCAGGTGCGAGCCCACGACGACCTGGTGGCGGTGGGT TGGCAGCCGGAGCCGGGTGG
Downstream 100 bases:
>100_bases TCCCCTTCGTGCTGGCCGCCGGACTTGTCGCCGTCGCGCTGCTTCACGCCTATCGGCTGGCCGTCCCTCCGCGCGCGGAC TTGGCGGGCGCCGTACGCCG
Product: integral membrane protein
Products: NA
Alternate protein names: Integral Membrane Protein; Type II Secretion System F Domain-Containing Protein; Type II Secretion System F Domain Protein; Type II Secretion System Domain-Containing Protein
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MVVMAMLGFVLAVAAAALGLLVILRLSRGLSAMPRIELRPSLDRHQTRQVGVALAAGLVVLLITRWALAALAAGAVVYLW PRLFGGGRAGRRQLEKIEALAAWTESLRDTATAAAGLEQAIPATVGAAHALLRAPVRDLAARLDGRVPLPEALARFADDV DDPAADMVVAALSLNARQRAGGLERILTSLAASSRTELEMRRKVEHERRALRRQAQRIAFAVLGFVALQAVFARGWVEPY STPLGQLVLAILAAIFVGSFVRMRSLSNGEVEAKFLTSPRDITEIASYKPHPVRIGGRT
Sequences:
>Translated_299_residues MVVMAMLGFVLAVAAAALGLLVILRLSRGLSAMPRIELRPSLDRHQTRQVGVALAAGLVVLLITRWALAALAAGAVVYLW PRLFGGGRAGRRQLEKIEALAAWTESLRDTATAAAGLEQAIPATVGAAHALLRAPVRDLAARLDGRVPLPEALARFADDV DDPAADMVVAALSLNARQRAGGLERILTSLAASSRTELEMRRKVEHERRALRRQAQRIAFAVLGFVALQAVFARGWVEPY STPLGQLVLAILAAIFVGSFVRMRSLSNGEVEAKFLTSPRDITEIASYKPHPVRIGGRT >Mature_299_residues MVVMAMLGFVLAVAAAALGLLVILRLSRGLSAMPRIELRPSLDRHQTRQVGVALAAGLVVLLITRWALAALAAGAVVYLW PRLFGGGRAGRRQLEKIEALAAWTESLRDTATAAAGLEQAIPATVGAAHALLRAPVRDLAARLDGRVPLPEALARFADDV DDPAADMVVAALSLNARQRAGGLERILTSLAASSRTELEMRRKVEHERRALRRQAQRIAFAVLGFVALQAVFARGWVEPY STPLGQLVLAILAAIFVGSFVRMRSLSNGEVEAKFLTSPRDITEIASYKPHPVRIGGRT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32096; Mature: 32096
Theoretical pI: Translated: 11.78; Mature: 11.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVMAMLGFVLAVAAAALGLLVILRLSRGLSAMPRIELRPSLDRHQTRQVGVALAAGLVV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LLITRWALAALAAGAVVYLWPRLFGGGRAGRRQLEKIEALAAWTESLRDTATAAAGLEQA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPATVGAAHALLRAPVRDLAARLDGRVPLPEALARFADDVDDPAADMVVAALSLNARQRA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GGLERILTSLAASSRTELEMRRKVEHERRALRRQAQRIAFAVLGFVALQAVFARGWVEPY CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC STPLGQLVLAILAAIFVGSFVRMRSLSNGEVEAKFLTSPRDITEIASYKPHPVRIGGRT CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCCCCEECCCCC >Mature Secondary Structure MVVMAMLGFVLAVAAAALGLLVILRLSRGLSAMPRIELRPSLDRHQTRQVGVALAAGLVV CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH LLITRWALAALAAGAVVYLWPRLFGGGRAGRRQLEKIEALAAWTESLRDTATAAAGLEQA HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IPATVGAAHALLRAPVRDLAARLDGRVPLPEALARFADDVDDPAADMVVAALSLNARQRA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH GGLERILTSLAASSRTELEMRRKVEHERRALRRQAQRIAFAVLGFVALQAVFARGWVEPY CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC STPLGQLVLAILAAIFVGSFVRMRSLSNGEVEAKFLTSPRDITEIASYKPHPVRIGGRT CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA