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The map label for this gene is nudC [H]

Identifier: 119715750

GI number: 119715750

Start: 1608707

End: 1609630

Strand: Direct

Name: nudC [H]

Synonym: Noca_1514

Alternate gene names: 119715750

Gene position: 1608707-1609630 (Clockwise)

Preceding gene: 119715747

Following gene: 119715752

Centisome position: 32.27

GC content: 74.68

Gene sequence:

>924_bases
GTGACGTATCCGCACCAGCAGCTCGCGGCCAACCCCCACGACCGCACCGCGCTGCACCGCGGCGACGACGAGTGGCTCGA
CCAGCGGTGGGCCGACCCCGAGTCGCGGGTGCTCGTCGTCTCCGGCACCCGGATCCGGCCCCGCGACGGCCAGGTCGAGT
GGGTCTCGCCCGCGGAGGCGCCGGAGGGCCTTCGCGTGCTGCTGGGCGAGCGCGACGGGCGGGCGTGGTTCGCGGTGGTG
ACCGATGCGGCGCTCTCGAAGACCGGCGAACCGGGCGAGTGGACGCCACTGCGAGGCCTGCTGCCCCGGCTGGTCGAGGG
CGCGGTCGACGACGCGGTCACCGGCGCCCCGCTGGTGTTCCACGCCCTCGGCCTGGCCGAGTGGCTCTTCGTGACCCGGT
TCTGCCCGCGCTGCGGTGAGCCGCTGCGACCCCGGTCCTCGGGCCACGAGCTGGTCTGCGACAACGGGCACACCCAGTTC
CCGCGCACCGACCCGGCCGTGATCATGCTCGTGACGTCGGGCGAGCCCGGGGTCGAGGACGAGCGCTGCCTCCTCGGCCG
GCAGGCGGTCTGGCCCGAGGGGCGCTACTCGACCCTCGCCGGCTTCTGCGAGCCGGGCGAGACGCTCGAGGACGCCGTAC
GCCGGGAGGTCCTCGAGGAGGTCGGCATCCGGGTGGGCGATGTGGAGTACTTCGGCAACCAGCCCTGGCCGCTGCCCGCC
AGCCTGATGCTGGGCTTCGTGGGCCGGGCGCTGACCACCGAGGTGCGCGTGGACGAGCACGAGATCGAGGACGCCCGCTG
GTTCACCCGCGCCGAGATGAGGGCGCTGGCCGAGGCCGGCACCCTGGTCCTCCCCGGCGGCGTCTCGATCAGCCGGTCCC
TGGTCGAGCACTGGTACGGCGGCCCGCTCCCCGGCCACTGGTAG

Upstream 100 bases:

>100_bases
CAGCGGGTCTCCGGGCATGAGGACGAGGGGGGCGATGTCGCCCGGCCGGGCGCCGATGTGGGTGCTCACGTAGGGCAAGG
CTAGGGCTAACCTCGCCCGG

Downstream 100 bases:

>100_bases
CCGCGTCTCGCGGGATCGGACTCGTGGTCGGTCGTCCGACGACGTGGTTACGGTCGGCGCGGACGCCGAAGACCCCAACC
CGCCGCCGGCGGGTCGATCA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTYPHQQLAANPHDRTALHRGDDEWLDQRWADPESRVLVVSGTRIRPRDGQVEWVSPAEAPEGLRVLLGERDGRAWFAVV
TDAALSKTGEPGEWTPLRGLLPRLVEGAVDDAVTGAPLVFHALGLAEWLFVTRFCPRCGEPLRPRSSGHELVCDNGHTQF
PRTDPAVIMLVTSGEPGVEDERCLLGRQAVWPEGRYSTLAGFCEPGETLEDAVRREVLEEVGIRVGDVEYFGNQPWPLPA
SLMLGFVGRALTTEVRVDEHEIEDARWFTRAEMRALAEAGTLVLPGGVSISRSLVEHWYGGPLPGHW

Sequences:

>Translated_307_residues
MTYPHQQLAANPHDRTALHRGDDEWLDQRWADPESRVLVVSGTRIRPRDGQVEWVSPAEAPEGLRVLLGERDGRAWFAVV
TDAALSKTGEPGEWTPLRGLLPRLVEGAVDDAVTGAPLVFHALGLAEWLFVTRFCPRCGEPLRPRSSGHELVCDNGHTQF
PRTDPAVIMLVTSGEPGVEDERCLLGRQAVWPEGRYSTLAGFCEPGETLEDAVRREVLEEVGIRVGDVEYFGNQPWPLPA
SLMLGFVGRALTTEVRVDEHEIEDARWFTRAEMRALAEAGTLVLPGGVSISRSLVEHWYGGPLPGHW
>Mature_306_residues
TYPHQQLAANPHDRTALHRGDDEWLDQRWADPESRVLVVSGTRIRPRDGQVEWVSPAEAPEGLRVLLGERDGRAWFAVVT
DAALSKTGEPGEWTPLRGLLPRLVEGAVDDAVTGAPLVFHALGLAEWLFVTRFCPRCGEPLRPRSSGHELVCDNGHTQFP
RTDPAVIMLVTSGEPGVEDERCLLGRQAVWPEGRYSTLAGFCEPGETLEDAVRREVLEEVGIRVGDVEYFGNQPWPLPAS
LMLGFVGRALTTEVRVDEHEIEDARWFTRAEMRALAEAGTLVLPGGVSISRSLVEHWYGGPLPGHW

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=284, Percent_Identity=36.6197183098592, Blast_Score=165, Evalue=4e-41,
Organism=Homo sapiens, GI50593112, Length=254, Percent_Identity=34.251968503937, Blast_Score=131, Evalue=9e-31,
Organism=Escherichia coli, GI48994995, Length=179, Percent_Identity=31.2849162011173, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71986510, Length=205, Percent_Identity=31.219512195122, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI212645999, Length=205, Percent_Identity=31.219512195122, Blast_Score=92, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6321371, Length=202, Percent_Identity=35.1485148514851, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 33989; Mature: 33857

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYPHQQLAANPHDRTALHRGDDEWLDQRWADPESRVLVVSGTRIRPRDGQVEWVSPAEA
CCCCCHHHHCCCCCCHHHCCCCHHHHHHHCCCCCCCEEEEECCEECCCCCCEEEECCCCC
PEGLRVLLGERDGRAWFAVVTDAALSKTGEPGEWTPLRGLLPRLVEGAVDDAVTGAPLVF
CCCEEEEEECCCCCEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
HALGLAEWLFVTRFCPRCGEPLRPRSSGHELVCDNGHTQFPRTDPAVIMLVTSGEPGVED
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCH
ERCLLGRQAVWPEGRYSTLAGFCEPGETLEDAVRREVLEEVGIRVGDVEYFGNQPWPLPA
HHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEECCHHCCCCCCCCCH
SLMLGFVGRALTTEVRVDEHEIEDARWFTRAEMRALAEAGTLVLPGGVSISRSLVEHWYG
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCC
GPLPGHW
CCCCCCC
>Mature Secondary Structure 
TYPHQQLAANPHDRTALHRGDDEWLDQRWADPESRVLVVSGTRIRPRDGQVEWVSPAEA
CCCCHHHHCCCCCCHHHCCCCHHHHHHHCCCCCCCEEEEECCEECCCCCCEEEECCCCC
PEGLRVLLGERDGRAWFAVVTDAALSKTGEPGEWTPLRGLLPRLVEGAVDDAVTGAPLVF
CCCEEEEEECCCCCEEEEEEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
HALGLAEWLFVTRFCPRCGEPLRPRSSGHELVCDNGHTQFPRTDPAVIMLVTSGEPGVED
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCCCH
ERCLLGRQAVWPEGRYSTLAGFCEPGETLEDAVRREVLEEVGIRVGDVEYFGNQPWPLPA
HHHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEECCHHCCCCCCCCCH
SLMLGFVGRALTTEVRVDEHEIEDARWFTRAEMRALAEAGTLVLPGGVSISRSLVEHWYG
HHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCC
GPLPGHW
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]