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The map label for this gene is yfdE [H]

Identifier: 119715742

GI number: 119715742

Start: 1597015

End: 1598172

Strand: Reverse

Name: yfdE [H]

Synonym: Noca_1506

Alternate gene names: 119715742

Gene position: 1598172-1597015 (Counterclockwise)

Preceding gene: 119715743

Following gene: 119715736

Centisome position: 32.05

GC content: 73.32

Gene sequence:

>1158_bases
ATGACTGAAGGCCCCCTCTCCGACCTGGTCGTGCTCGACCTGACCCGCGCCCTCGCGGGCCCGCACGCCGCGATGATGCT
CGGCGACATGGGCGCGCGGGTGATCAAGATCGAGCCGCCCGCCGGCGACGACACCCGCGGCTGGGGTCCGCCGTTCGTCG
GCGCGGACGACGAGCGCGAGTCGACGTACTTCCTCTCGGCGAACCGCAACAAGGAGTCGATCGTCCTCGACCTGAAGTCC
GAGGACGACAAGGACGTGCTGGCGCGGCTGGTCGAGCGGGCCGACGTGCTGATGGAGAACTACCGCGTCGGCGTGCTGGA
CCGCCTGGGCTTCCCGGTCTCGCGGCTGCACGAGCTCAACCCCGGGCTGGTGGTGCTGAGCATCACCGGCTTCGGGCACG
ACGGGCCGGAGGCCACGCGGGCGGGCTACGACCAGATCGCGCAGGGCGAGGGCGGGCTGATGTCGATCACCGGCACCACC
CAGCCCACCAAGGTGGGCGTCCCGATCGCGGACCTGATCGCCGGCATGAACGGCGCCTTCGGCGTGCTGGCCGCCCTGCA
CGAGCGCACCCGCACCGGCCGCGGCCGGGTGGTCCGGACCTCGCTGCTCGCCGGGATGGTCGGCGTGCACGCGTTCCAGG
GCACCCGGTGGACGGTCGCCGGCGAGGTGCCCGGGCTGGCCGGTGACCACCACCCCTCGATCGCGCCGTACGGCATGTTC
GCGACCGCGACCGCGCCCGTGCAGATCGCGTGCGGGTCGGAGAACCTGTGGCGCGCGCTGTGCACGGCGTTCGGCTGGGA
CGCCGCGGAGCCGGGCTTCGCCACCAACCCCGAGCGGGTCGCCAACCGCGACGCGCTGACCGCGCGGATCGAGGACCTGT
TCGCCACCGAGCCCGCCGAGCACTGGCTGGCGGCGCTCGCCGACGCCGGCGTGCCGTCGGGCAAGGTGCGCTCGATGGAC
GACGTGTACTCCTGGGAGCAGACCCTGTCGCAGGGCCTGCTGCTCGCCGTCGAGCACGCCACCCAGGGCGAGCTGAAGCT
GCCCGGGTCGCCGATCCGCTTCGACGACGACCCGTGGTCCGGTGGCCGGTCCACCCACCTGGCGCCGCCCACGCTGGGCC
AGCACGACGCCTCGATCCGGGAGTGGCTCGACTCGTGA

Upstream 100 bases:

>100_bases
GCGAGATGGAGTGGATGTGGCAATCGTGACTGGCCCGGCCCGGGGCCGGTTGTCACCTCTGGCCGTAGGCGTTCCCACGG
GCGGTCGATAGCGTCCTGCC

Downstream 100 bases:

>100_bases
GCTGAATGCGGGCGGGCGGGCCCCAGCCGGCGCCGTCGTACGGCGAGTCGCCACTCGACCGCCGTGCCGGCGACCTCGGG
GGCAATTCTGGAACTGTTGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MTEGPLSDLVVLDLTRALAGPHAAMMLGDMGARVIKIEPPAGDDTRGWGPPFVGADDERESTYFLSANRNKESIVLDLKS
EDDKDVLARLVERADVLMENYRVGVLDRLGFPVSRLHELNPGLVVLSITGFGHDGPEATRAGYDQIAQGEGGLMSITGTT
QPTKVGVPIADLIAGMNGAFGVLAALHERTRTGRGRVVRTSLLAGMVGVHAFQGTRWTVAGEVPGLAGDHHPSIAPYGMF
ATATAPVQIACGSENLWRALCTAFGWDAAEPGFATNPERVANRDALTARIEDLFATEPAEHWLAALADAGVPSGKVRSMD
DVYSWEQTLSQGLLLAVEHATQGELKLPGSPIRFDDDPWSGGRSTHLAPPTLGQHDASIREWLDS

Sequences:

>Translated_385_residues
MTEGPLSDLVVLDLTRALAGPHAAMMLGDMGARVIKIEPPAGDDTRGWGPPFVGADDERESTYFLSANRNKESIVLDLKS
EDDKDVLARLVERADVLMENYRVGVLDRLGFPVSRLHELNPGLVVLSITGFGHDGPEATRAGYDQIAQGEGGLMSITGTT
QPTKVGVPIADLIAGMNGAFGVLAALHERTRTGRGRVVRTSLLAGMVGVHAFQGTRWTVAGEVPGLAGDHHPSIAPYGMF
ATATAPVQIACGSENLWRALCTAFGWDAAEPGFATNPERVANRDALTARIEDLFATEPAEHWLAALADAGVPSGKVRSMD
DVYSWEQTLSQGLLLAVEHATQGELKLPGSPIRFDDDPWSGGRSTHLAPPTLGQHDASIREWLDS
>Mature_384_residues
TEGPLSDLVVLDLTRALAGPHAAMMLGDMGARVIKIEPPAGDDTRGWGPPFVGADDERESTYFLSANRNKESIVLDLKSE
DDKDVLARLVERADVLMENYRVGVLDRLGFPVSRLHELNPGLVVLSITGFGHDGPEATRAGYDQIAQGEGGLMSITGTTQ
PTKVGVPIADLIAGMNGAFGVLAALHERTRTGRGRVVRTSLLAGMVGVHAFQGTRWTVAGEVPGLAGDHHPSIAPYGMFA
TATAPVQIACGSENLWRALCTAFGWDAAEPGFATNPERVANRDALTARIEDLFATEPAEHWLAALADAGVPSGKVRSMDD
VYSWEQTLSQGLLLAVEHATQGELKLPGSPIRFDDDPWSGGRSTHLAPPTLGQHDASIREWLDS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=382, Percent_Identity=37.17277486911, Blast_Score=250, Evalue=2e-66,
Organism=Homo sapiens, GI300863124, Length=408, Percent_Identity=34.8039215686275, Blast_Score=236, Evalue=3e-62,
Organism=Homo sapiens, GI300863126, Length=380, Percent_Identity=35, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI13376042, Length=408, Percent_Identity=32.843137254902, Blast_Score=200, Evalue=1e-51,
Organism=Homo sapiens, GI266456254, Length=211, Percent_Identity=32.7014218009479, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI42794625, Length=211, Percent_Identity=32.7014218009479, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI266458393, Length=211, Percent_Identity=32.7014218009479, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI266458397, Length=211, Percent_Identity=32.7014218009479, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI266458395, Length=140, Percent_Identity=35, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI42822893, Length=140, Percent_Identity=35, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI87082093, Length=391, Percent_Identity=36.3171355498721, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI1788717, Length=409, Percent_Identity=30.5623471882641, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1786222, Length=244, Percent_Identity=27.4590163934426, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=318, Percent_Identity=24.8427672955975, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648431, Length=376, Percent_Identity=38.031914893617, Blast_Score=248, Evalue=5e-66,
Organism=Drosophila melanogaster, GI24585488, Length=205, Percent_Identity=32.1951219512195, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41055; Mature: 40923

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEGPLSDLVVLDLTRALAGPHAAMMLGDMGARVIKIEPPAGDDTRGWGPPFVGADDERE
CCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
STYFLSANRNKESIVLDLKSEDDKDVLARLVERADVLMENYRVGVLDRLGFPVSRLHELN
CEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCC
PGLVVLSITGFGHDGPEATRAGYDQIAQGEGGLMSITGTTQPTKVGVPIADLIAGMNGAF
CCEEEEEEECCCCCCCHHHHHCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCHH
GVLAALHERTRTGRGRVVRTSLLAGMVGVHAFQGTRWTVAGEVPGLAGDHHPSIAPYGMF
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEE
ATATAPVQIACGSENLWRALCTAFGWDAAEPGFATNPERVANRDALTARIEDLFATEPAE
EECCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCHH
HWLAALADAGVPSGKVRSMDDVYSWEQTLSQGLLLAVEHATQGELKLPGSPIRFDDDPWS
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCEECCCCCCCCCCCCCC
GGRSTHLAPPTLGQHDASIREWLDS
CCCCCCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure 
TEGPLSDLVVLDLTRALAGPHAAMMLGDMGARVIKIEPPAGDDTRGWGPPFVGADDERE
CCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
STYFLSANRNKESIVLDLKSEDDKDVLARLVERADVLMENYRVGVLDRLGFPVSRLHELN
CEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCC
PGLVVLSITGFGHDGPEATRAGYDQIAQGEGGLMSITGTTQPTKVGVPIADLIAGMNGAF
CCEEEEEEECCCCCCCHHHHHCHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCHH
GVLAALHERTRTGRGRVVRTSLLAGMVGVHAFQGTRWTVAGEVPGLAGDHHPSIAPYGMF
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEE
ATATAPVQIACGSENLWRALCTAFGWDAAEPGFATNPERVANRDALTARIEDLFATEPAE
EECCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCHH
HWLAALADAGVPSGKVRSMDDVYSWEQTLSQGLLLAVEHATQGELKLPGSPIRFDDDPWS
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCCEECCCCCCCCCCCCCC
GGRSTHLAPPTLGQHDASIREWLDS
CCCCCCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]