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The map label for this gene is ycdC [C]

Identifier: 119715709

GI number: 119715709

Start: 1559905

End: 1560492

Strand: Reverse

Name: ycdC [C]

Synonym: Noca_1473

Alternate gene names: 119715709

Gene position: 1560492-1559905 (Counterclockwise)

Preceding gene: 119715720

Following gene: 119715708

Centisome position: 31.3

GC content: 69.39

Gene sequence:

>588_bases
ATGCCGCGGCGTGAGCGCCGTGCGCAGCTGATGGAGTCAGCGCTCGAGGTGTTCGTCGCCCAGGGCTACCACGCCGCCGC
CATGGACGACATCGCCGAACGGGCCGGTGTCTCCAAGCCGGTGCTCTACCAGCACTTCCCCGGCAAGCTGGACCTCTACC
TCGCCCTGCTCGACGAGTCGTGCGACACGATCATCGACAACTGTCGCGCGGCCCTGGCCTCGACGCAGGACAACAAGCAG
CGGGTCGCGGCGACCATCGACGCCTTCTTCGAGTACGTCGCGGGCGAGTCCGGTGCGTTCCGGCTCGTCTTCGAGTCCGA
CCTGACCAACGAGCCGGCGGTGCGTGGGCAGGTCGACCGGGTGACCATCGAGTGCGCGTCGATGATCGCCGACGTCATCC
AAGACGACACGGGCCTGCCGAGCGACGCCTCGCGGCTGCTCGCGGTGTCCCTGGTGGGAATGGCTCAGGTCAGCGCCCGG
TTCTGGCTCACGGACCCCGGCCGCATCAGCCAGTCCGACGCAGCCGCCCTGGTGGCCGGGCTCGCCTGGCGCGGGATCCG
CGGCTACCCCAAGTCCGACGAACACTGA

Upstream 100 bases:

>100_bases
GCTCGACGCCATCCCCGAGACAGCCCCGCGTTGCCGATACAGTTCGCGGGTGACCGCTGAGCAGTACGACGCACCGACCG
CGCGACCGCGCGGCGCGCGG

Downstream 100 bases:

>100_bases
TCCACCCGGCACCACCCCGAACCGAAGGAGGACCTCGTGGAGGTCAAGATCGGCGTCCAGAACGCCGCCCGTGAGCTGAC
CATCGAGACCGACGAGTCGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPRRERRAQLMESALEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDESCDTIIDNCRAALASTQDNKQ
RVAATIDAFFEYVAGESGAFRLVFESDLTNEPAVRGQVDRVTIECASMIADVIQDDTGLPSDASRLLAVSLVGMAQVSAR
FWLTDPGRISQSDAAALVAGLAWRGIRGYPKSDEH

Sequences:

>Translated_195_residues
MPRRERRAQLMESALEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDESCDTIIDNCRAALASTQDNKQ
RVAATIDAFFEYVAGESGAFRLVFESDLTNEPAVRGQVDRVTIECASMIADVIQDDTGLPSDASRLLAVSLVGMAQVSAR
FWLTDPGRISQSDAAALVAGLAWRGIRGYPKSDEH
>Mature_194_residues
PRRERRAQLMESALEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDESCDTIIDNCRAALASTQDNKQR
VAATIDAFFEYVAGESGAFRLVFESDLTNEPAVRGQVDRVTIECASMIADVIQDDTGLPSDASRLLAVSLVGMAQVSARF
WLTDPGRISQSDAAALVAGLAWRGIRGYPKSDEH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21236; Mature: 21105

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRERRAQLMESALEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDES
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHH
CDTIIDNCRAALASTQDNKQRVAATIDAFFEYVAGESGAFRLVFESDLTNEPAVRGQVDR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHH
VTIECASMIADVIQDDTGLPSDASRLLAVSLVGMAQVSARFWLTDPGRISQSDAAALVAG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH
LAWRGIRGYPKSDEH
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
PRRERRAQLMESALEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDES
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHH
CDTIIDNCRAALASTQDNKQRVAATIDAFFEYVAGESGAFRLVFESDLTNEPAVRGQVDR
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHH
VTIECASMIADVIQDDTGLPSDASRLLAVSLVGMAQVSARFWLTDPGRISQSDAAALVAG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHH
LAWRGIRGYPKSDEH
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]