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The map label for this gene is ydhC [H]

Identifier: 119715658

GI number: 119715658

Start: 1507194

End: 1507859

Strand: Direct

Name: ydhC [H]

Synonym: Noca_1422

Alternate gene names: 119715658

Gene position: 1507194-1507859 (Clockwise)

Preceding gene: 119715649

Following gene: 119715660

Centisome position: 30.23

GC content: 68.62

Gene sequence:

>666_bases
ATGACTCCGTTGGAACCGACGAACCATCGTCAGGCCCCGAATCGAGCGGCCGAGGTCTATGAACAGCTGCGTCAGGCCAT
CGTGGATGGCTCGATCCGTCCGAACGAGCGCCTCATCGAGGCCGATCTGGCCGAGCGCCTCCAGGTCAGCCGAACGCCCG
TGCGCGAGACCATGCTGCGGCTCGCCGGCGACGGCCTGATCGTCAATCATCGCCGGGGCTGGGTCGTGCGGGAGCACTCG
CCCGATGAGATCCGCGAGGTCTACGAGGTGCGTGCCGCGCTGGAGGGGTTCGCCGCGAGGCTGGCCGCCGAGCGCGCCAC
GGACGACGAGCTCGAGCAGATCGCGGCGAACCACCGCGACTACACCGACACCGTCCGGGGATCTGCCCGCGGCCAGCTGG
TCGAGCACAACGACGCGTTCCACGATGCGGTGATCAACGCTGCGCGTAACGCCCTCCTCGCGCAGCGGATACGGGACAAC
AGCCAGTACTACTTCATCCACCGCATCGCGGGCTTCCTCTCCGACGAGGAAGTCCGGTCCTCGATCGCGGGGCACGAGAA
CCTGGTGCAGGCGCTGCATGCCCGGGACGCCGATCGTGCCGAGCGGGTCGCCCGGGAGAACGTGACCGAGGGCCTGCGCA
AGGTGCTCGACCGGCTGCCTCGCTGA

Upstream 100 bases:

>100_bases
GTGCTGGTGTGAGAGGCGTCCGCGGTCGATCGCGACGGTAGAGTCGCCCGGCATGCCCCATCGAGCCCACTCACCCGGAA
TGCGGCGAAAGGAGGAACCG

Downstream 100 bases:

>100_bases
CCGCGCCGCGGTCACTCGTCGCGGTCGTACCTCGGGTCGACCTGCTCCGCGTCGATCCCGAGCAGCTCGGCGACCTGCTC
GACCACCACGGTGAGGACCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MTPLEPTNHRQAPNRAAEVYEQLRQAIVDGSIRPNERLIEADLAERLQVSRTPVRETMLRLAGDGLIVNHRRGWVVREHS
PDEIREVYEVRAALEGFAARLAAERATDDELEQIAANHRDYTDTVRGSARGQLVEHNDAFHDAVINAARNALLAQRIRDN
SQYYFIHRIAGFLSDEEVRSSIAGHENLVQALHARDADRAERVARENVTEGLRKVLDRLPR

Sequences:

>Translated_221_residues
MTPLEPTNHRQAPNRAAEVYEQLRQAIVDGSIRPNERLIEADLAERLQVSRTPVRETMLRLAGDGLIVNHRRGWVVREHS
PDEIREVYEVRAALEGFAARLAAERATDDELEQIAANHRDYTDTVRGSARGQLVEHNDAFHDAVINAARNALLAQRIRDN
SQYYFIHRIAGFLSDEEVRSSIAGHENLVQALHARDADRAERVARENVTEGLRKVLDRLPR
>Mature_220_residues
TPLEPTNHRQAPNRAAEVYEQLRQAIVDGSIRPNERLIEADLAERLQVSRTPVRETMLRLAGDGLIVNHRRGWVVREHSP
DEIREVYEVRAALEGFAARLAAERATDDELEQIAANHRDYTDTVRGSARGQLVEHNDAFHDAVINAARNALLAQRIRDNS
QYYFIHRIAGFLSDEEVRSSIAGHENLVQALHARDADRAERVARENVTEGLRKVLDRLPR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=219, Percent_Identity=26.9406392694064, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI87082149, Length=198, Percent_Identity=26.2626262626263, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25132; Mature: 25001

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLEPTNHRQAPNRAAEVYEQLRQAIVDGSIRPNERLIEADLAERLQVSRTPVRETMLR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
LAGDGLIVNHRRGWVVREHSPDEIREVYEVRAALEGFAARLAAERATDDELEQIAANHRD
HHCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
YTDTVRGSARGQLVEHNDAFHDAVINAARNALLAQRIRDNSQYYFIHRIAGFLSDEEVRS
HHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCHHHHHH
SIAGHENLVQALHARDADRAERVARENVTEGLRKVLDRLPR
HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPLEPTNHRQAPNRAAEVYEQLRQAIVDGSIRPNERLIEADLAERLQVSRTPVRETMLR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
LAGDGLIVNHRRGWVVREHSPDEIREVYEVRAALEGFAARLAAERATDDELEQIAANHRD
HHCCCEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
YTDTVRGSARGQLVEHNDAFHDAVINAARNALLAQRIRDNSQYYFIHRIAGFLSDEEVRS
HHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCHHHHHH
SIAGHENLVQALHARDADRAERVARENVTEGLRKVLDRLPR
HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]