Click here to switch to the map view.

The map label for this gene is 119715575

Identifier: 119715575

GI number: 119715575

Start: 1410514

End: 1412085

Strand: Reverse

Name: 119715575

Synonym: Noca_1339

Alternate gene names: NA

Gene position: 1412085-1410514 (Counterclockwise)

Preceding gene: 119715580

Following gene: 119715573

Centisome position: 28.32

GC content: 74.24

Gene sequence:

>1572_bases
GTGACTTCGTCGAAGAGCAGCTATGACGTGGTGGTGGTCGGAGGCGGGCACAACGGCCTGGTCGCCGCCGCCTACCTCGC
CCGCGCCGGGCTCTCCGTGCTGGTGCTCGAGCGGCTCGGCCACACGGGAGGGGCGGCGGTCTCGGCCCAGGCGTTCCCCG
GCCGTCCGGCTCGCCTCTCGCGCTACTCCTACCTGGTGTCGCTGATGCCCGCCGAGCTGATCGCCGACCTCGGCCTCGAC
CTGCGGCTCGCGTCGCGATCGGTGGCGTCGTACACCCCGACGATCCGCGACGGCCAGGCCGGTGGCCTGCTCGTCGAGCG
GCCGGCGGGACAGCAGACCGCGGAGTCGTTCCGCCGGCTGACGGGCGGCGACGAGGAGTACGCCGCCTGGGAGCGGTTCT
ACGCCGAGGTCGGCGAGCTCGCCGCGGTCGTGGCACCCACCCTGCTCCAGCCGCTGCCGCTCGAGCGGGAGCTCCGCGGC
CGGGTCCCGGCCGACGTCTGGCGCGACTTCGTCGTGAACCCCATCGGCGAGACGATCCAGGAGCGGTTCACCGACGACAC
GGTCCGGGGCGTCGTCGCGACCGATGCGCTGATCGGCACCTTCGCCTCGCTCCACGACCGGTCGCTGGTCCAGAACCGGT
GCTTCCTGTACCACCTGCTCGGCAACGGCACCGGCGAGTGGCGGGTGCCCGTGGGCGGGATGGGCGCCGTCACGGACGCG
CTCGGAGCGGCCGCGGCCTCGGCCGGCGCCGAGATCCTCACCTCGGCCGGGGTGAGCGGCATCCGCGCCGGCGAGGACGC
GGCCGAGGTCAGCTGGCACGACGGAACGCTCACCCACACGGTGGCCGCGCGGCACGTGCTCTCGAACGTCGCGCCGTGGG
TGCTGCGGATCCTCCTCGGCGAGGGCGAGGACCCGGACAGCAAGCCGCAGGGGGCGCAGCTCAAGATCAACCTGCTCCTC
GATCGCCTCCCCCGGCTGCGGTCCGGGGTGGCCCCGGAGGTCGCGTTCGCCGGCACCCTCCACCTGGCCGAGGGATACCG
CCAGCTCGAGGCGGCGTACGCCGAGGCGGCCGCCGGCCGGGTGCCGTCGGTGCTCCCGGGTGAGATCTACTGCCACTCCC
TGACCGACCCCTCGATCCTGGGCGACGCACCGGCCGGGACCCACACCCTCACCTACTTCGGCGTGCACACGCCGGCCGCG
CTGTTCGAGGCCGACCCCGTGGGCGCCAAGGAGGTCGCCGTCGCTCGCGCCCTGGCGGCCCTCAACGAGCAGCTGGCCGA
GCCGATCGAGTCGTGCCTCGCCACCGACGCCGACGGCAACCCGTGCATCGAGGCCAAGACCCCGCAGGAGGTCGAGCGGG
ACCTGGCCATGCCCGGCGGGCACATCTTCCACGGAGACCTCGAGTGGCCCTGGGCGCCGAACCGGGCCCGTCTGGACACG
CCTGCCCAGCAGTGGGGGGTGCAGACCGACATCGGGTCCGTGCTGATGTGCGGCTCCGGGTCGCGCCGCGGTGGCGCCGT
CTCCGGCCTCGGCGGACACAGCGCGGCCCAGGCCGTGCTGGCGATGCGCTGA

Upstream 100 bases:

>100_bases
CTCCTCCCGAGCGCCCACCCTGCGCCCGCCCTGCGCCCATCTTGACGCCCCGACTCGCCGCCTGCCGGGCGACCTGCCGA
CGGCGCACTACGTTGGCCCG

Downstream 100 bases:

>100_bases
CCAGCGACGCGGATTTTTCGCGGGCTCGCCCCGCTGGTAGAGTTCACGTCGCTTCACAGCGAGCGCCATTAGCTCAATTG
GCAGAGCAGCTGACTCTTAA

Product: FAD-dependent pyridine nucleotide-disulfide oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 522

Protein sequence:

>523_residues
MTSSKSSYDVVVVGGGHNGLVAAAYLARAGLSVLVLERLGHTGGAAVSAQAFPGRPARLSRYSYLVSLMPAELIADLGLD
LRLASRSVASYTPTIRDGQAGGLLVERPAGQQTAESFRRLTGGDEEYAAWERFYAEVGELAAVVAPTLLQPLPLERELRG
RVPADVWRDFVVNPIGETIQERFTDDTVRGVVATDALIGTFASLHDRSLVQNRCFLYHLLGNGTGEWRVPVGGMGAVTDA
LGAAAASAGAEILTSAGVSGIRAGEDAAEVSWHDGTLTHTVAARHVLSNVAPWVLRILLGEGEDPDSKPQGAQLKINLLL
DRLPRLRSGVAPEVAFAGTLHLAEGYRQLEAAYAEAAAGRVPSVLPGEIYCHSLTDPSILGDAPAGTHTLTYFGVHTPAA
LFEADPVGAKEVAVARALAALNEQLAEPIESCLATDADGNPCIEAKTPQEVERDLAMPGGHIFHGDLEWPWAPNRARLDT
PAQQWGVQTDIGSVLMCGSGSRRGGAVSGLGGHSAAQAVLAMR

Sequences:

>Translated_523_residues
MTSSKSSYDVVVVGGGHNGLVAAAYLARAGLSVLVLERLGHTGGAAVSAQAFPGRPARLSRYSYLVSLMPAELIADLGLD
LRLASRSVASYTPTIRDGQAGGLLVERPAGQQTAESFRRLTGGDEEYAAWERFYAEVGELAAVVAPTLLQPLPLERELRG
RVPADVWRDFVVNPIGETIQERFTDDTVRGVVATDALIGTFASLHDRSLVQNRCFLYHLLGNGTGEWRVPVGGMGAVTDA
LGAAAASAGAEILTSAGVSGIRAGEDAAEVSWHDGTLTHTVAARHVLSNVAPWVLRILLGEGEDPDSKPQGAQLKINLLL
DRLPRLRSGVAPEVAFAGTLHLAEGYRQLEAAYAEAAAGRVPSVLPGEIYCHSLTDPSILGDAPAGTHTLTYFGVHTPAA
LFEADPVGAKEVAVARALAALNEQLAEPIESCLATDADGNPCIEAKTPQEVERDLAMPGGHIFHGDLEWPWAPNRARLDT
PAQQWGVQTDIGSVLMCGSGSRRGGAVSGLGGHSAAQAVLAMR
>Mature_522_residues
TSSKSSYDVVVVGGGHNGLVAAAYLARAGLSVLVLERLGHTGGAAVSAQAFPGRPARLSRYSYLVSLMPAELIADLGLDL
RLASRSVASYTPTIRDGQAGGLLVERPAGQQTAESFRRLTGGDEEYAAWERFYAEVGELAAVVAPTLLQPLPLERELRGR
VPADVWRDFVVNPIGETIQERFTDDTVRGVVATDALIGTFASLHDRSLVQNRCFLYHLLGNGTGEWRVPVGGMGAVTDAL
GAAAASAGAEILTSAGVSGIRAGEDAAEVSWHDGTLTHTVAARHVLSNVAPWVLRILLGEGEDPDSKPQGAQLKINLLLD
RLPRLRSGVAPEVAFAGTLHLAEGYRQLEAAYAEAAAGRVPSVLPGEIYCHSLTDPSILGDAPAGTHTLTYFGVHTPAAL
FEADPVGAKEVAVARALAALNEQLAEPIESCLATDADGNPCIEAKTPQEVERDLAMPGGHIFHGDLEWPWAPNRARLDTP
AQQWGVQTDIGSVLMCGSGSRRGGAVSGLGGHSAAQAVLAMR

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=575, Percent_Identity=28.8695652173913, Blast_Score=161, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17540238, Length=552, Percent_Identity=28.0797101449275, Blast_Score=166, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54879; Mature: 54748

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSKSSYDVVVVGGGHNGLVAAAYLARAGLSVLVLERLGHTGGAAVSAQAFPGRPARLS
CCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHH
RYSYLVSLMPAELIADLGLDLRLASRSVASYTPTIRDGQAGGLLVERPAGQQTAESFRRL
HHHHHHHHHHHHHHHHCCCCEEEHHCHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
TGGDEEYAAWERFYAEVGELAAVVAPTLLQPLPLERELRGRVPADVWRDFVVNPIGETIQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHCHHHHHHH
ERFTDDTVRGVVATDALIGTFASLHDRSLVQNRCFLYHLLGNGTGEWRVPVGGMGAVTDA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCHHHHHH
LGAAAASAGAEILTSAGVSGIRAGEDAAEVSWHDGTLTHTVAARHVLSNVAPWVLRILLG
HHHHHHHHHHHHHHHCCCCCCCCCCCHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
EGEDPDSKPQGAQLKINLLLDRLPRLRSGVAPEVAFAGTLHLAEGYRQLEAAYAEAAAGR
CCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
VPSVLPGEIYCHSLTDPSILGDAPAGTHTLTYFGVHTPAALFEADPVGAKEVAVARALAA
CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHH
LNEQLAEPIESCLATDADGNPCIEAKTPQEVERDLAMPGGHIFHGDLEWPWAPNRARLDT
HHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCC
PAQQWGVQTDIGSVLMCGSGSRRGGAVSGLGGHSAAQAVLAMR
CHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
TSSKSSYDVVVVGGGHNGLVAAAYLARAGLSVLVLERLGHTGGAAVSAQAFPGRPARLS
CCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCEEECCCCCCCCHHHH
RYSYLVSLMPAELIADLGLDLRLASRSVASYTPTIRDGQAGGLLVERPAGQQTAESFRRL
HHHHHHHHHHHHHHHHCCCCEEEHHCHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
TGGDEEYAAWERFYAEVGELAAVVAPTLLQPLPLERELRGRVPADVWRDFVVNPIGETIQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCHHHHHHHHHCHHHHHHH
ERFTDDTVRGVVATDALIGTFASLHDRSLVQNRCFLYHLLGNGTGEWRVPVGGMGAVTDA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEECCCCCHHHHHH
LGAAAASAGAEILTSAGVSGIRAGEDAAEVSWHDGTLTHTVAARHVLSNVAPWVLRILLG
HHHHHHHHHHHHHHHCCCCCCCCCCCHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
EGEDPDSKPQGAQLKINLLLDRLPRLRSGVAPEVAFAGTLHLAEGYRQLEAAYAEAAAGR
CCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
VPSVLPGEIYCHSLTDPSILGDAPAGTHTLTYFGVHTPAALFEADPVGAKEVAVARALAA
CCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCHHHHHHHHHHHH
LNEQLAEPIESCLATDADGNPCIEAKTPQEVERDLAMPGGHIFHGDLEWPWAPNRARLDT
HHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCC
PAQQWGVQTDIGSVLMCGSGSRRGGAVSGLGGHSAAQAVLAMR
CHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]