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The map label for this gene is yfkH [H]

Identifier: 119715572

GI number: 119715572

Start: 1406143

End: 1407276

Strand: Reverse

Name: yfkH [H]

Synonym: Noca_1336

Alternate gene names: 119715572

Gene position: 1407276-1406143 (Counterclockwise)

Preceding gene: 119715573

Following gene: 119715571

Centisome position: 28.23

GC content: 71.69

Gene sequence:

>1134_bases
ATGAGGCCGGCCTCCCTGGGGCACCCAGGAGGTATGAGCAGCGACACGCGCGCCGGTACGGCGCCGCAGGACCGGGCCGG
CGATGCCGCCCGCGATCCCTCGAGCGATCCCGAGGCCGCGAAGATCGACTCCCCGTCGGAGCTCACCCGGCACTCCTGGC
TCTTCGTCGCGCGCAAGACCGTCCGTGAGTTCTCCGACGACCAGTGCACCGACCTCGCCGCGGCGCTGACCTACTACGCC
GTCCTCGCCGTGTTCCCGGCCGCGATCGCCCTGACCTCGCTGCTCGGGCTGGTCGGCCAGGGCACCAGCAGCGTCGAGAC
CCTGCTCGGCATCGTGGACGACCTGGGCGGCGCGTCCGTGGTCAAGAGCGTCCACGACCCGCTCATCGAGATCAGTCGCT
CGCAGGCGGCCGGGCTGGCGTTCGTCCTCGGCCTCGCGGGCGCCCTCTGGTCGGCGAGCGGGTACGTCGGCGCCTTCGGC
CGCGCGATGAACCGGATCTACGAGATCCGGGAGGGCCGGCCGGTGTGGAAGCTGCGTCCGCTGATGCTCCTGCTCACCCT
CGTGCTGGTCACCCTCGCCGCGGCGGTCCTGCTCGCGCTGGTCGTCACCGGTCCGGTGGCCGACTCCGTGGGCTCGGCCC
TCGGGGTCGGCTCGACGCTGCTCGGCGTCTGGAACATCGCGAAGTGGCCGGTGATCGCGCTCGCCGTCGTGGTGATGGTC
GCGTTGCTCTACTACGCGACGCCGAACGTGCGCCAGCCGAGGTTCCGGTGGGTGAGCGTCGGCGCCGTGCTCGCGATCGT
CACCTGGGCACTGGTGTCCCTGGCGTTCGGCTTCTACGTCGCGAACTTCTCCTCCTACGACAAGACGTACGGCGCGCTTG
GTGGCGTGATCGCCTTCCTCCTCTGGGTGTGGCTGACCAACCTGGCCCTGCTGTTCGGCGCCGAGCTGGACGCCGAGCTC
GAGCGGGGTCGCGAGCTCCAGTCGGGGATCCCGGCCGAGCGGTTCATCCAGCTCCCGCCCCGGGACACCCGCAACATCGA
CAAGGCGCGGGAGAAGGACGAGGCCGACGAGCGCCGCGGCCGGAGGATCCGGCTGCGGGCCCGCCGTACCCACGCCCGCC
GCGGGAAGGACTGA

Upstream 100 bases:

>100_bases
CGGCGTACGCCAAGATCGGCGTGACCTCGCGGGCCCGGGCGGTCGCGTGGTGCCTGCTGCACGGGTTCGCCCCGCCGGAC
CCCGAGGGGCCGCGGCTCGC

Downstream 100 bases:

>100_bases
CATGGCTCTGACCTCCGTCTGGCGCGATCGGCACCCGGTCCGGTCTGCGACTCCCCCGGACGTCTCCGGCGAGTGGGACG
TCGTCGTGGTCGGCGCGGGC

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MRPASLGHPGGMSSDTRAGTAPQDRAGDAARDPSSDPEAAKIDSPSELTRHSWLFVARKTVREFSDDQCTDLAAALTYYA
VLAVFPAAIALTSLLGLVGQGTSSVETLLGIVDDLGGASVVKSVHDPLIEISRSQAAGLAFVLGLAGALWSASGYVGAFG
RAMNRIYEIREGRPVWKLRPLMLLLTLVLVTLAAAVLLALVVTGPVADSVGSALGVGSTLLGVWNIAKWPVIALAVVVMV
ALLYYATPNVRQPRFRWVSVGAVLAIVTWALVSLAFGFYVANFSSYDKTYGALGGVIAFLLWVWLTNLALLFGAELDAEL
ERGRELQSGIPAERFIQLPPRDTRNIDKAREKDEADERRGRRIRLRARRTHARRGKD

Sequences:

>Translated_377_residues
MRPASLGHPGGMSSDTRAGTAPQDRAGDAARDPSSDPEAAKIDSPSELTRHSWLFVARKTVREFSDDQCTDLAAALTYYA
VLAVFPAAIALTSLLGLVGQGTSSVETLLGIVDDLGGASVVKSVHDPLIEISRSQAAGLAFVLGLAGALWSASGYVGAFG
RAMNRIYEIREGRPVWKLRPLMLLLTLVLVTLAAAVLLALVVTGPVADSVGSALGVGSTLLGVWNIAKWPVIALAVVVMV
ALLYYATPNVRQPRFRWVSVGAVLAIVTWALVSLAFGFYVANFSSYDKTYGALGGVIAFLLWVWLTNLALLFGAELDAEL
ERGRELQSGIPAERFIQLPPRDTRNIDKAREKDEADERRGRRIRLRARRTHARRGKD
>Mature_377_residues
MRPASLGHPGGMSSDTRAGTAPQDRAGDAARDPSSDPEAAKIDSPSELTRHSWLFVARKTVREFSDDQCTDLAAALTYYA
VLAVFPAAIALTSLLGLVGQGTSSVETLLGIVDDLGGASVVKSVHDPLIEISRSQAAGLAFVLGLAGALWSASGYVGAFG
RAMNRIYEIREGRPVWKLRPLMLLLTLVLVTLAAAVLLALVVTGPVADSVGSALGVGSTLLGVWNIAKWPVIALAVVVMV
ALLYYATPNVRQPRFRWVSVGAVLAIVTWALVSLAFGFYVANFSSYDKTYGALGGVIAFLLWVWLTNLALLFGAELDAEL
ERGRELQSGIPAERFIQLPPRDTRNIDKAREKDEADERRGRRIRLRARRTHARRGKD

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 40547; Mature: 40547

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CEEEHHHHHHHHCCCCC
>Mature Secondary Structure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CEEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969503; 9384377 [H]